MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:14.7 nTPM
HPA Brain:59.0 nTPM
GTEx:14.7 nTPM
FANTOM5:112.6 Scaled Tags Per Million
Pig:21.5 nTPM
Mouse:7.1 nTPM
Allen mouse:1.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 59.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 52.5
1830 Male, age 51, unknown 61.6
1833 Male, age 53, unknown 60.8
2666 Male, age 74, left hemisphere 60.7
2219 Male, age 76, both hemispheres 53.1
2019 Male, age 18, unknown 49.2
1870 Female, age 42, unknown 48.9
2411 Female, age 72, unknown 48.6
2828 Female, age 72, unknown 48.5
2586 Male, age 75, left hemisphere 46.7
1827 Male, age 72, unknown 46.5
Dorsal raphe nucleus
nTPM: 46.5
2750 Male, age 76, both hemispheres 56.0
1828 Male, age 53, unknown 46.0
2016 Female, age 72, unknown 45.6
2047 Male, age 72, unknown 45.6
2298 Female, age 72, unknown 39.5
Inferior colliculus
nTPM: 47.7
2849 Male, age 72, unknown 56.6
1890 Male, age 53, unknown 50.0
1848 Female, age 42, unknown 43.2
2097 Female, age 72, unknown 41.0
Median raphe nucleus
nTPM: 52.1
2220 Male, age 76, midline 52.1
Periaquaductal grey, anterior
nTPM: 42.1
1947 Male, age 18, unknown 45.7
1795 Male, age 51, unknown 43.7
2502 Female, age 75, unknown 36.9
Periaquaductal grey, dorsal
nTPM: 47.2
2850 Male, age 76, both hemispheres 51.9
1831 Male, age 72, unknown 48.1
2464 Female, age 72, unknown 46.7
1840 Male, age 53, unknown 42.0
Periaquaductal grey, lateral
nTPM: 50.7
2140 Male, age 76, both hemispheres 54.9
2053 Male, age 18, unknown 49.6
2272 Male, age 74, both hemispheres 47.5
Pretectal area
nTPM: 48.9
2407 Male, age 75, both hemispheres 66.8
2316 Male, age 76, right hemisphere 65.3
2825 Male, age 18, unknown 50.0
2224 Female, age 72, unknown 48.5
1815 Male, age 53, unknown 46.3
1944 Female, age 72, unknown 46.3
2667 Female, age 75, unknown 45.9
2007 Male, age 72, unknown 44.9
2273 Male, age 74, both hemispheres 43.0
1816 Male, age 51, unknown 42.5
1817 Female, age 42, unknown 38.1
Red nucleus
nTPM: 51.7
2584 Male, age 75, left hemisphere 58.3
2725 Female, age 75, unknown 57.9
2823 Male, age 76, right hemisphere 57.3
1904 Male, age 53, unknown 54.6
1865 Male, age 51, unknown 53.4
2227 Male, age 72, unknown 50.5
2503 Female, age 72, unknown 50.3
2588 Male, age 74, left hemisphere 49.4
1954 Female, age 42, unknown 48.6
2769 Male, age 72, unknown 48.3
2785 Male, age 18, unknown 47.9
1821 Female, age 72, unknown 43.8
Substantia nigra
nTPM: 59.0
2590 Female, age 75, unknown 66.1
2241 Male, age 72, unknown 65.5
2583 Male, age 75, right hemisphere 65.5
2699 Male, age 18, unknown 62.3
2665 Male, age 74, both hemispheres 60.2
1916 Female, age 42, unknown 59.4
1851 Male, age 51, unknown 58.1
1941 Male, age 53, unknown 56.1
2409 Female, age 72, unknown 52.7
1889 Female, age 72, unknown 44.4
Superior colliculus
nTPM: 50.5
1913 Female, age 42, unknown 57.5
2587 Male, age 74, left hemisphere 55.4
2087 Female, age 72, unknown 52.0
2664 Male, age 75, both hemispheres 52.0
1839 Male, age 51, unknown 50.6
1995 Male, age 72, unknown 49.0
1895 Male, age 76, right hemisphere 48.8
2261 Male, age 18, unknown 48.7
2668 Female, age 75, unknown 47.4
1796 Male, age 53, unknown 43.5
Ventral tegmental area
nTPM: 52.5
2218 Male, age 76, both hemispheres 59.3
2021 Male, age 53, unknown 56.9
2223 Female, age 72, unknown 52.0
2410 Female, age 72, unknown 50.4
1915 Female, age 42, unknown 49.6
1942 Male, age 51, unknown 46.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 14.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 14.7
Samples: 139

Max nTPM: 32.6
Min nTPM: 6.6
Std nTPM: 4.1
Median nTPM: 14.1
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 32.6
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 26.3
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 25.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 24.7
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 23.9
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 23.5
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 21.6
GTEX-1F6IF-0011-R2b-SM-9QEHB 60-69 years, male 21.0
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 20.9
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 20.6
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 20.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 112.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 112.6
FF:10158-103A5 76 years, female 112.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 21.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 21.5
Samples: 4

Max nTPM: 23.2
Min nTPM: 19.9
Sample A Female 19.9
Sample B Female 22.1
Sample C Male 23.2
Sample D Male 20.9
Midbrain
nTPM: 18.2
Samples: 4

Max nTPM: 20.6
Min nTPM: 16.4
Sample A Female 18.8
Sample B Female 20.6
Sample C Male 16.8
Sample D Male 16.4
Periaqueductal gray
nTPM: 21.3
Samples: 3

Max nTPM: 26.2
Min nTPM: 17.3
Sample B Female 20.4
Sample C Male 26.2
Sample D Male 17.3
Superior colliculi
nTPM: 15.1
Samples: 4

Max nTPM: 16.4
Min nTPM: 12.5
Sample A Female 16.4
Sample B Female 12.5
Sample C Male 15.4
Sample D Male 16.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 7.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 7.1
Samples: 4

Max nTPM: 7.8
Min nTPM: 6.0
Sample A Male 6.0
Sample B Male 7.4
Sample C Female 7.8
Sample D Female 7.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.5
70302270 Antisense, RP_050607_04_A08, Mouse strain C57BL/6J (56 days, male) 3.1
74300807 Antisense, RP_051219_03_G11, Mouse strain C57BL/6J (56 days, male) 0.0

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