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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
135.2
nTPM
Monaco:
230.4
nTPM
Schmiedel:
214.2
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
135.2
HPA sample
nTPM
gdT-cell nTPM: 80.2
Samples: 6
Max nTPM: 102.2
Min nTPM: 67.3
P10809_1007
73.5
P10809_1022
102.2
P10809_1041
83.4
P10809_1060
67.3
P10809_1077
84.3
P10809_1098
70.5
MAIT T-cell nTPM: 103.4
Samples: 6
Max nTPM: 134.8
Min nTPM: 88.7
P10809_1006
103.3
P10809_1024
134.8
P10809_1043
99.7
P10809_1062
93.9
P10809_1083
88.7
P10809_1097
100.2
Memory CD4 T-cell nTPM: 98.6
Samples: 6
Max nTPM: 121.0
Min nTPM: 76.4
P10809_1014
98.9
P10809_1026
108.6
P10809_1045
121.0
P10809_1064
76.4
P10809_1086
84.5
P10809_1113
101.9
Memory CD8 T-cell nTPM: 89.3
Samples: 5
Max nTPM: 110.1
Min nTPM: 71.9
P10809_1012
87.5
P10809_1027
71.9
P10809_1046
103.0
P10809_1065
74.1
P10809_1111
110.1
Naive CD4 T-cell nTPM: 107.1
Samples: 6
Max nTPM: 132.4
Min nTPM: 82.7
P10809_1015
119.8
P10809_1030
96.9
P10809_1049
132.4
P10809_1068
102.4
P10809_1085
82.7
P10809_1112
108.4
Naive CD8 T-cell nTPM: 97.9
Samples: 6
Max nTPM: 116.0
Min nTPM: 73.6
P10809_1016
116.0
P10809_1031
112.1
P10809_1050
94.7
P10809_1069
81.4
P10809_1087
73.6
P10809_1110
109.6
T-reg nTPM: 135.2
Samples: 6
Max nTPM: 149.9
Min nTPM: 113.9
P10809_1018
138.5
P10809_1037
124.9
P10809_1056
113.9
P10809_1075
138.8
P10809_1094
149.9
P10809_1106
145.3
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
230.4
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 199.9
Samples: 4
Max nTPM: 218.7
Min nTPM: 151.4
RHH5202_R3573
218.7
RHH5230_R3602
212.8
RHH5259_R3631
151.4
RHH5288_R3660
216.7
Effector memory CD8 T-cell nTPM: 230.4
Samples: 4
Max nTPM: 274.7
Min nTPM: 171.3
RHH5203_R3574
274.7
RHH5231_R3603
230.2
RHH5260_R3632
171.3
RHH5289_R3661
245.2
MAIT T-cell nTPM: 221.9
Samples: 4
Max nTPM: 255.4
Min nTPM: 190.6
RHH5233_R3605
255.4
RHH5205_R3576
230.9
RHH5262_R3634
190.6
RHH5297_R3663
210.7
Memory CD4 T-cell TFH nTPM: 209.8
Samples: 4
Max nTPM: 222.8
Min nTPM: 185.9
RHH5300_R3666
185.9
RHH5236_R3608
209.4
RHH5265_R3637
221.1
RHH5208_R3579
222.8
Memory CD4 T-cell Th1 nTPM: 188.9
Samples: 4
Max nTPM: 217.6
Min nTPM: 165.2
RHH5210_R3581
183.7
RHH5302_R3668
217.6
RHH5238_R3610
165.2
RHH5267_R3639
188.9
Memory CD4 T-cell Th1/Th17 nTPM: 188.1
Samples: 4
Max nTPM: 219.1
Min nTPM: 171.5
RHH5303_R3669
219.1
RHH5211_R3582
189.3
RHH5239_R3611
171.5
RHH5268_R3640
172.6
Memory CD4 T-cell Th17 nTPM: 202.8
Samples: 4
Max nTPM: 249.5
Min nTPM: 176.1
RHH5304_R3670
249.5
RHH5212_R3583
200.8
RHH5240_R3612
176.1
RHH5269_R3641
184.6
Memory CD4 T-cell Th2 nTPM: 223.7
Samples: 4
Max nTPM: 236.2
Min nTPM: 200.0
RHH5305_R3671
235.7
RHH5213_R3584
222.9
RHH5241_R3613
236.2
RHH5270_R3642
200.0
Naive CD4 T-cell nTPM: 203.1
Samples: 4
Max nTPM: 216.6
Min nTPM: 189.6
RHH5306_R3672
198.0
RHH5214_R3585
189.6
RHH5242_R3614
208.1
RHH5271_R3643
216.6
Naive CD8 T-cell nTPM: 218.1
Samples: 4
Max nTPM: 286.4
Min nTPM: 118.4
RHH5201_R3572
257.9
RHH5229_R3601
118.4
RHH5258_R3630
209.6
RHH5287_R3659
286.4
Non-Vd2 gdTCR nTPM: 179.6
Samples: 4
Max nTPM: 208.5
Min nTPM: 148.6
RHH5235_R3607
160.5
RHH5264_R3636
200.7
RHH5207_R3578
208.5
RHH5299_R3665
148.6
T-reg nTPM: 212.8
Samples: 4
Max nTPM: 220.2
Min nTPM: 209.2
RHH5301_R3667
211.0
RHH5237_R3609
220.2
RHH5266_R3638
210.6
RHH5209_R3580
209.2
Terminal effector memory CD4 T-cell nTPM: 189.4
Samples: 2
Max nTPM: 214.7
Min nTPM: 164.0
RHH5243_R3615
214.7
RHH5272_R3644
164.0
Terminal effector memory CD8 T-cell nTPM: 195.8
Samples: 4
Max nTPM: 215.3
Min nTPM: 153.9
RHH5232_R3604
215.3
RHH5204_R3575
202.0
RHH5261_R3633
153.9
RHH5296_R3662
211.8
Vd2 gdTCR nTPM: 180.6
Samples: 4
Max nTPM: 203.0
Min nTPM: 159.3
RHH5234_R3606
181.7
RHH5206_R3577
203.0
RHH5263_R3635
178.4
RHH5298_R3664
159.3
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
The Human Protein Atlas project is funded
