MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:737.4 nTPM
HPA Brain:313.7 nTPM
GTEx:737.4 nTPM
FANTOM5:237.8 Scaled Tags Per Million

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 313.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 262.9
2019 Male, age 18, unknown 330.7
2828 Female, age 72, unknown 324.8
2666 Male, age 74, left hemisphere 285.1
2411 Female, age 72, unknown 275.5
1827 Male, age 72, unknown 260.4
1833 Male, age 53, unknown 248.4
2586 Male, age 75, left hemisphere 244.4
1830 Male, age 51, unknown 238.5
1870 Female, age 42, unknown 235.4
2219 Male, age 76, both hemispheres 185.4
Dorsal raphe nucleus
nTPM: 271.9
2298 Female, age 72, unknown 318.3
2750 Male, age 76, both hemispheres 278.7
1828 Male, age 53, unknown 276.4
2016 Female, age 72, unknown 252.8
2047 Male, age 72, unknown 233.4
Inferior colliculus
nTPM: 227.7
2097 Female, age 72, unknown 281.2
1890 Male, age 53, unknown 250.3
1848 Female, age 42, unknown 207.5
2849 Male, age 72, unknown 171.6
Median raphe nucleus
nTPM: 255.1
2220 Male, age 76, midline 255.1
Periaquaductal grey, anterior
nTPM: 235.8
1795 Male, age 51, unknown 245.5
2502 Female, age 75, unknown 240.2
1947 Male, age 18, unknown 221.6
Periaquaductal grey, dorsal
nTPM: 213.5
1831 Male, age 72, unknown 242.5
2464 Female, age 72, unknown 218.9
1840 Male, age 53, unknown 206.0
2850 Male, age 76, both hemispheres 186.8
Periaquaductal grey, lateral
nTPM: 224.1
2140 Male, age 76, both hemispheres 243.6
2272 Male, age 74, both hemispheres 227.4
2053 Male, age 18, unknown 201.2
Pretectal area
nTPM: 258.0
1817 Female, age 42, unknown 318.1
2007 Male, age 72, unknown 290.0
1815 Male, age 53, unknown 287.6
1816 Male, age 51, unknown 279.1
2667 Female, age 75, unknown 270.9
1944 Female, age 72, unknown 267.4
2273 Male, age 74, both hemispheres 256.8
2316 Male, age 76, right hemisphere 248.4
2224 Female, age 72, unknown 226.6
2825 Male, age 18, unknown 210.0
2407 Male, age 75, both hemispheres 182.9
Red nucleus
nTPM: 313.7
2503 Female, age 72, unknown 366.1
1821 Female, age 72, unknown 345.8
2227 Male, age 72, unknown 344.9
1865 Male, age 51, unknown 329.1
2769 Male, age 72, unknown 324.1
1904 Male, age 53, unknown 320.1
2785 Male, age 18, unknown 319.0
1954 Female, age 42, unknown 314.0
2588 Male, age 74, left hemisphere 306.3
2725 Female, age 75, unknown 302.5
2823 Male, age 76, right hemisphere 299.5
2584 Male, age 75, left hemisphere 193.3
Substantia nigra
nTPM: 298.4
1916 Female, age 42, unknown 441.8
1851 Male, age 51, unknown 350.9
2699 Male, age 18, unknown 325.0
1889 Female, age 72, unknown 302.4
2665 Male, age 74, both hemispheres 275.3
1941 Male, age 53, unknown 273.1
2583 Male, age 75, right hemisphere 264.9
2241 Male, age 72, unknown 262.5
2590 Female, age 75, unknown 251.1
2409 Female, age 72, unknown 236.9
Superior colliculus
nTPM: 257.4
2087 Female, age 72, unknown 297.0
1913 Female, age 42, unknown 286.8
1995 Male, age 72, unknown 286.1
2668 Female, age 75, unknown 283.0
2587 Male, age 74, left hemisphere 268.3
1796 Male, age 53, unknown 258.9
2261 Male, age 18, unknown 252.6
1839 Male, age 51, unknown 219.8
1895 Male, age 76, right hemisphere 213.1
2664 Male, age 75, both hemispheres 208.7
Ventral tegmental area
nTPM: 282.7
1915 Female, age 42, unknown 337.8
2410 Female, age 72, unknown 328.1
2218 Male, age 76, both hemispheres 275.7
2223 Female, age 72, unknown 268.3
1942 Male, age 51, unknown 245.2
2021 Male, age 53, unknown 241.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 737.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 737.4
Samples: 139

Max nTPM: 1924.2
Min nTPM: 212.1
Std nTPM: 228.2
Median nTPM: 708.9
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 1924.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 1329.6
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 1328.8
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 1319.3
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 1306.6
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 1214.0
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 1163.9
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 1154.1
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 1122.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 1105.7
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 1102.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 237.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 237.8
FF:10158-103A5 76 years, female 237.8

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