MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:69.3 nTPM
HPA Brain:70.4 nTPM
GTEx:69.3 nTPM
FANTOM5:156.5 Scaled Tags Per Million
Pig:59.4 nTPM
Mouse:6.3 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 70.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 59.9
2586 Male, age 75, left hemisphere 81.0
2828 Female, age 72, unknown 74.6
2666 Male, age 74, left hemisphere 67.4
1870 Female, age 42, unknown 62.7
1833 Male, age 53, unknown 57.3
1830 Male, age 51, unknown 57.1
1827 Male, age 72, unknown 53.5
2019 Male, age 18, unknown 52.5
2411 Female, age 72, unknown 50.9
2219 Male, age 76, both hemispheres 42.1
Dorsal raphe nucleus
nTPM: 70.2
2016 Female, age 72, unknown 94.2
1828 Male, age 53, unknown 82.0
2047 Male, age 72, unknown 66.4
2298 Female, age 72, unknown 59.9
2750 Male, age 76, both hemispheres 48.4
Inferior colliculus
nTPM: 63.2
1890 Male, age 53, unknown 73.2
2097 Female, age 72, unknown 60.2
2849 Male, age 72, unknown 59.7
1848 Female, age 42, unknown 59.6
Median raphe nucleus
nTPM: 44.1
2220 Male, age 76, midline 44.1
Periaquaductal grey, anterior
nTPM: 59.4
2502 Female, age 75, unknown 67.3
1947 Male, age 18, unknown 56.2
1795 Male, age 51, unknown 54.8
Periaquaductal grey, dorsal
nTPM: 70.4
2850 Male, age 76, both hemispheres 75.1
1840 Male, age 53, unknown 70.1
1831 Male, age 72, unknown 68.6
2464 Female, age 72, unknown 67.9
Periaquaductal grey, lateral
nTPM: 61.2
2140 Male, age 76, both hemispheres 69.8
2053 Male, age 18, unknown 64.8
2272 Male, age 74, both hemispheres 49.1
Pretectal area
nTPM: 49.1
2825 Male, age 18, unknown 66.1
2407 Male, age 75, both hemispheres 58.5
2273 Male, age 74, both hemispheres 57.7
2224 Female, age 72, unknown 55.8
2316 Male, age 76, right hemisphere 48.8
1815 Male, age 53, unknown 46.0
2667 Female, age 75, unknown 44.3
1944 Female, age 72, unknown 42.8
1817 Female, age 42, unknown 42.3
1816 Male, age 51, unknown 40.4
2007 Male, age 72, unknown 37.1
Red nucleus
nTPM: 67.6
2503 Female, age 72, unknown 87.0
1954 Female, age 42, unknown 76.0
1821 Female, age 72, unknown 75.2
1865 Male, age 51, unknown 72.7
2769 Male, age 72, unknown 72.2
2227 Male, age 72, unknown 67.9
1904 Male, age 53, unknown 67.7
2584 Male, age 75, left hemisphere 60.9
2588 Male, age 74, left hemisphere 60.5
2725 Female, age 75, unknown 57.5
2785 Male, age 18, unknown 57.0
2823 Male, age 76, right hemisphere 56.6
Substantia nigra
nTPM: 67.2
2699 Male, age 18, unknown 89.9
2665 Male, age 74, both hemispheres 74.6
1851 Male, age 51, unknown 74.3
2241 Male, age 72, unknown 72.7
2583 Male, age 75, right hemisphere 70.9
2590 Female, age 75, unknown 67.4
1916 Female, age 42, unknown 60.0
1941 Male, age 53, unknown 56.5
2409 Female, age 72, unknown 55.5
1889 Female, age 72, unknown 50.4
Superior colliculus
nTPM: 60.1
1995 Male, age 72, unknown 78.5
2664 Male, age 75, both hemispheres 74.8
1913 Female, age 42, unknown 71.4
2668 Female, age 75, unknown 64.9
1839 Male, age 51, unknown 62.0
2587 Male, age 74, left hemisphere 60.2
2087 Female, age 72, unknown 50.2
1796 Male, age 53, unknown 49.8
1895 Male, age 76, right hemisphere 47.7
2261 Male, age 18, unknown 41.2
Ventral tegmental area
nTPM: 57.4
1915 Female, age 42, unknown 64.8
2021 Male, age 53, unknown 60.7
2223 Female, age 72, unknown 59.6
1942 Male, age 51, unknown 59.4
2410 Female, age 72, unknown 51.3
2218 Male, age 76, both hemispheres 48.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 69.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 69.3
Samples: 139

Max nTPM: 151.0
Min nTPM: 21.8
Std nTPM: 27.1
Median nTPM: 63.2
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 151.0
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 142.2
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 139.8
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 133.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 125.2
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 123.3
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 122.3
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 116.8
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 116.5
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 116.4
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 113.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 156.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 156.5
FF:10158-103A5 76 years, female 156.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 59.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 53.6
Samples: 4

Max nTPM: 77.6
Min nTPM: 42.6
Sample A Female 44.3
Sample B Female 77.6
Sample C Male 42.6
Sample D Male 49.8
Midbrain
nTPM: 45.2
Samples: 4

Max nTPM: 52.6
Min nTPM: 41.5
Sample A Female 43.0
Sample B Female 52.6
Sample C Male 43.7
Sample D Male 41.5
Periaqueductal gray
nTPM: 59.4
Samples: 3

Max nTPM: 62.3
Min nTPM: 57.4
Sample B Female 58.5
Sample C Male 62.3
Sample D Male 57.4
Superior colliculi
nTPM: 53.5
Samples: 4

Max nTPM: 70.5
Min nTPM: 39.6
Sample A Female 56.4
Sample B Female 70.5
Sample C Male 39.6
Sample D Male 47.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 6.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 6.3
Samples: 4

Max nTPM: 8.2
Min nTPM: 4.4
Sample A Male 6.4
Sample B Male 6.1
Sample C Female 4.4
Sample D Female 8.2

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