We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
42.7
nTPM
HPA Brain:
32.6
nTPM
GTEx:
42.7
nTPM
FANTOM5:
35.8
Scaled Tags Per Million
Pig:
24.3
nTPM
Mouse:
13.4
nTPM
Allen mouse:
0.3
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
32.6
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 24.4
1870
Female, age 42, unknown
30.7
1833
Male, age 53, unknown
29.2
1827
Male, age 72, unknown
28.2
2411
Female, age 72, unknown
28.2
1830
Male, age 51, unknown
28.0
2828
Female, age 72, unknown
25.3
2586
Male, age 75, left hemisphere
21.1
2219
Male, age 76, both hemispheres
19.6
2019
Male, age 18, unknown
17.9
2666
Male, age 74, left hemisphere
16.0
Dorsal raphe nucleus nTPM: 29.5
2298
Female, age 72, unknown
35.2
2047
Male, age 72, unknown
30.0
2750
Male, age 76, both hemispheres
29.3
2016
Female, age 72, unknown
28.8
1828
Male, age 53, unknown
24.0
Inferior colliculus nTPM: 25.5
2097
Female, age 72, unknown
29.5
2849
Male, age 72, unknown
24.6
1848
Female, age 42, unknown
24.0
1890
Male, age 53, unknown
23.9
Median raphe nucleus nTPM: 24.3
2220
Male, age 76, midline
24.3
Periaquaductal grey, anterior nTPM: 28.3
1947
Male, age 18, unknown
34.9
1795
Male, age 51, unknown
27.0
2502
Female, age 75, unknown
23.1
Periaquaductal grey, dorsal nTPM: 24.8
1840
Male, age 53, unknown
27.4
2850
Male, age 76, both hemispheres
27.4
1831
Male, age 72, unknown
23.4
2464
Female, age 72, unknown
20.9
Periaquaductal grey, lateral nTPM: 32.6
2272
Male, age 74, both hemispheres
35.9
2053
Male, age 18, unknown
35.3
2140
Male, age 76, both hemispheres
26.6
Pretectal area nTPM: 26.7
2224
Female, age 72, unknown
35.4
2273
Male, age 74, both hemispheres
31.4
2825
Male, age 18, unknown
29.7
1815
Male, age 53, unknown
27.2
1816
Male, age 51, unknown
26.5
1817
Female, age 42, unknown
25.9
2007
Male, age 72, unknown
25.8
2407
Male, age 75, both hemispheres
24.0
1944
Female, age 72, unknown
23.0
2316
Male, age 76, right hemisphere
22.6
2667
Female, age 75, unknown
21.7
Red nucleus nTPM: 24.3
2725
Female, age 75, unknown
33.8
2503
Female, age 72, unknown
30.1
1821
Female, age 72, unknown
25.8
2823
Male, age 76, right hemisphere
25.7
2588
Male, age 74, left hemisphere
24.2
2769
Male, age 72, unknown
23.5
1954
Female, age 42, unknown
22.8
1865
Male, age 51, unknown
21.6
2785
Male, age 18, unknown
21.6
2584
Male, age 75, left hemisphere
21.3
2227
Male, age 72, unknown
20.7
1904
Male, age 53, unknown
20.4
Substantia nigra nTPM: 23.9
1851
Male, age 51, unknown
27.7
1941
Male, age 53, unknown
26.0
2241
Male, age 72, unknown
25.5
2590
Female, age 75, unknown
24.4
1889
Female, age 72, unknown
24.2
1916
Female, age 42, unknown
23.9
2699
Male, age 18, unknown
23.5
2583
Male, age 75, right hemisphere
21.9
2665
Male, age 74, both hemispheres
21.3
2409
Female, age 72, unknown
20.1
Superior colliculus nTPM: 25.0
1895
Male, age 76, right hemisphere
27.5
2087
Female, age 72, unknown
27.0
2587
Male, age 74, left hemisphere
26.7
1913
Female, age 42, unknown
26.5
2668
Female, age 75, unknown
25.4
1995
Male, age 72, unknown
25.3
1796
Male, age 53, unknown
24.9
2261
Male, age 18, unknown
24.2
1839
Male, age 51, unknown
23.3
2664
Male, age 75, both hemispheres
19.7
Ventral tegmental area nTPM: 25.6
2410
Female, age 72, unknown
28.3
2223
Female, age 72, unknown
26.9
2218
Male, age 76, both hemispheres
26.8
2021
Male, age 53, unknown
25.3
1915
Female, age 42, unknown
23.2
1942
Male, age 51, unknown
22.9
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
42.7
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 42.7
Samples: 139
Max nTPM: 89.8
Min nTPM: 27.2
Std nTPM: 10.5
Median nTPM: 39.3
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
89.8
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
86.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
83.0
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
74.3
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
67.8
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
64.3
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
60.2
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
59.0
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
58.7
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
55.8
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
55.7
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
54.8
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
54.7
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
54.6
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
53.9
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
52.6
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
52.3
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
52.1
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
51.7
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
51.5
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
51.1
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
51.1
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
51.0
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
50.9
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
50.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
50.2
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
49.6
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
49.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
49.3
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
48.7
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
48.5
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
48.2
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
48.1
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
47.9
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
47.7
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
47.7
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
47.3
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
47.3
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
47.1
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
46.6
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
46.2
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
45.8
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
45.6
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
45.6
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
45.5
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
45.4
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
45.4
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
45.2
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
45.0
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
44.9
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
44.1
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
43.9
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
43.9
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
43.1
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
42.9
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
42.7
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
42.6
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
41.7
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
41.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
41.7
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
41.4
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
41.3
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
41.1
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
40.5
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
40.3
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
40.2
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
39.9
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
39.9
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
39.4
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
39.3
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
39.3
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
39.2
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
39.2
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
39.1
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
39.0
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
39.0
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
38.8
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
38.7
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
38.6
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
38.6
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
38.6
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
38.6
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
38.6
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
38.4
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
38.3
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
38.3
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
38.1
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
38.1
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
38.0
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
37.6
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
37.6
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
37.2
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
36.9
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
36.8
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
36.8
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
36.8
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
36.8
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
36.8
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
36.6
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
36.1
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
35.9
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
35.8
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
35.8
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
35.7
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
35.7
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
35.7
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
35.6
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
35.4
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
35.4
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
35.4
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
35.3
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
35.2
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
34.9
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
34.9
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
34.9
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
34.9
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
34.6
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
34.3
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
34.3
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
34.2
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
33.9
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
33.5
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
33.3
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
33.2
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
33.0
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
33.0
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
32.4
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
31.8
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
31.7
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
31.7
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
31.0
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
30.5
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
29.4
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
29.2
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
29.1
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
28.7
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
27.4
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
27.3
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
27.2
Show allShow less
MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
13.4
Mouse sample
Sample description
nTPM
Midbrain nTPM: 13.5
Samples: 4
Max nTPM: 15.1
Min nTPM: 11.0
Sample A
Male
11.0
Sample B
Male
13.9
Sample C
Female
13.8
Sample D
Female
15.1
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.