MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:7.7 nTPM
HPA Brain:11.3 nTPM
GTEx:7.7 nTPM
FANTOM5:21.4 Scaled Tags Per Million
Pig:16.8 nTPM
Mouse:15.8 nTPM
Allen mouse:0.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 11.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 10.7
2219 Male, age 76, both hemispheres 15.5
2666 Male, age 74, left hemisphere 15.0
2019 Male, age 18, unknown 13.6
2828 Female, age 72, unknown 10.2
1830 Male, age 51, unknown 9.6
1833 Male, age 53, unknown 9.3
2411 Female, age 72, unknown 8.9
1827 Male, age 72, unknown 8.8
1870 Female, age 42, unknown 8.6
2586 Male, age 75, left hemisphere 7.1
Dorsal raphe nucleus
nTPM: 8.8
1828 Male, age 53, unknown 11.1
2750 Male, age 76, both hemispheres 9.5
2047 Male, age 72, unknown 8.7
2016 Female, age 72, unknown 8.0
2298 Female, age 72, unknown 6.5
Inferior colliculus
nTPM: 9.7
1890 Male, age 53, unknown 11.1
2097 Female, age 72, unknown 10.1
1848 Female, age 42, unknown 9.7
2849 Male, age 72, unknown 8.1
Median raphe nucleus
nTPM: 7.5
2220 Male, age 76, midline 7.5
Periaquaductal grey, anterior
nTPM: 9.1
2502 Female, age 75, unknown 9.6
1795 Male, age 51, unknown 8.8
1947 Male, age 18, unknown 8.8
Periaquaductal grey, dorsal
nTPM: 8.2
2850 Male, age 76, both hemispheres 8.8
2464 Female, age 72, unknown 8.7
1831 Male, age 72, unknown 7.9
1840 Male, age 53, unknown 7.6
Periaquaductal grey, lateral
nTPM: 7.9
2140 Male, age 76, both hemispheres 8.8
2053 Male, age 18, unknown 8.1
2272 Male, age 74, both hemispheres 6.8
Pretectal area
nTPM: 9.6
2007 Male, age 72, unknown 15.2
1817 Female, age 42, unknown 14.5
1816 Male, age 51, unknown 12.9
1944 Female, age 72, unknown 12.3
1815 Male, age 53, unknown 10.9
2316 Male, age 76, right hemisphere 9.2
2667 Female, age 75, unknown 7.8
2825 Male, age 18, unknown 6.7
2224 Female, age 72, unknown 6.6
2407 Male, age 75, both hemispheres 5.3
2273 Male, age 74, both hemispheres 4.7
Red nucleus
nTPM: 11.3
2588 Male, age 74, left hemisphere 13.5
1954 Female, age 42, unknown 13.0
1821 Female, age 72, unknown 12.6
2785 Male, age 18, unknown 12.5
2823 Male, age 76, right hemisphere 12.5
1904 Male, age 53, unknown 10.9
2227 Male, age 72, unknown 10.9
2769 Male, age 72, unknown 10.6
1865 Male, age 51, unknown 10.4
2503 Female, age 72, unknown 10.1
2584 Male, age 75, left hemisphere 9.4
2725 Female, age 75, unknown 9.3
Substantia nigra
nTPM: 9.3
2665 Male, age 74, both hemispheres 15.7
1889 Female, age 72, unknown 11.0
2409 Female, age 72, unknown 9.9
2590 Female, age 75, unknown 9.0
2241 Male, age 72, unknown 8.8
1851 Male, age 51, unknown 8.1
1941 Male, age 53, unknown 8.1
1916 Female, age 42, unknown 7.8
2583 Male, age 75, right hemisphere 7.8
2699 Male, age 18, unknown 7.0
Superior colliculus
nTPM: 9.1
2087 Female, age 72, unknown 11.9
2668 Female, age 75, unknown 11.9
2261 Male, age 18, unknown 10.6
1895 Male, age 76, right hemisphere 10.4
1995 Male, age 72, unknown 8.7
2587 Male, age 74, left hemisphere 8.7
1913 Female, age 42, unknown 8.1
1839 Male, age 51, unknown 8.0
1796 Male, age 53, unknown 7.9
2664 Male, age 75, both hemispheres 5.1
Ventral tegmental area
nTPM: 8.1
2223 Female, age 72, unknown 8.9
1942 Male, age 51, unknown 8.4
2410 Female, age 72, unknown 8.4
2218 Male, age 76, both hemispheres 8.3
1915 Female, age 42, unknown 7.3
2021 Male, age 53, unknown 7.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 7.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 7.7
Samples: 139

Max nTPM: 29.8
Min nTPM: 1.4
Std nTPM: 4.1
Median nTPM: 6.8
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 29.8
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 27.0
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 23.0
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 19.7
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 16.2
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 15.8
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 14.1
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 13.7
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 13.7
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 13.3
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 13.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 21.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 21.4
FF:10158-103A5 76 years, female 21.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 16.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 16.8
Samples: 4

Max nTPM: 22.2
Min nTPM: 13.0
Sample A Female 17.0
Sample B Female 22.2
Sample C Male 15.0
Sample D Male 13.0
Midbrain
nTPM: 11.9
Samples: 4

Max nTPM: 15.4
Min nTPM: 10.2
Sample A Female 15.4
Sample B Female 10.4
Sample C Male 10.2
Sample D Male 11.5
Periaqueductal gray
nTPM: 9.1
Samples: 3

Max nTPM: 10.0
Min nTPM: 8.3
Sample B Female 9.1
Sample C Male 10.0
Sample D Male 8.3
Superior colliculi
nTPM: 15.7
Samples: 4

Max nTPM: 23.0
Min nTPM: 10.9
Sample A Female 16.3
Sample B Female 23.0
Sample C Male 10.9
Sample D Male 12.6

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 15.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 15.8
Samples: 4

Max nTPM: 17.0
Min nTPM: 14.7
Sample A Male 17.0
Sample B Male 16.5
Sample C Female 15.0
Sample D Female 14.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.6
77800911 Antisense, RP_070219_01_A01, Mouse strain C57BL/6J (56 days, male) 0.6

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