MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:27.8 nTPM
HPA Brain:84.4 nTPM
GTEx:27.8 nTPM
FANTOM5:177.6 Scaled Tags Per Million
Pig:104.6 nTPM
Mouse:88.8 nTPM
Allen mouse:1.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 84.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 69.0
1830 Male, age 51, unknown 85.5
1870 Female, age 42, unknown 85.3
1833 Male, age 53, unknown 82.6
2019 Male, age 18, unknown 75.0
2411 Female, age 72, unknown 74.2
2666 Male, age 74, left hemisphere 60.2
2828 Female, age 72, unknown 59.7
2219 Male, age 76, both hemispheres 58.5
1827 Male, age 72, unknown 56.3
2586 Male, age 75, left hemisphere 53.1
Dorsal raphe nucleus
nTPM: 62.6
2750 Male, age 76, both hemispheres 79.9
2016 Female, age 72, unknown 73.4
1828 Male, age 53, unknown 62.8
2298 Female, age 72, unknown 49.0
2047 Male, age 72, unknown 47.8
Inferior colliculus
nTPM: 60.4
2849 Male, age 72, unknown 65.2
1848 Female, age 42, unknown 64.1
1890 Male, age 53, unknown 59.5
2097 Female, age 72, unknown 52.7
Median raphe nucleus
nTPM: 62.2
2220 Male, age 76, midline 62.2
Periaquaductal grey, anterior
nTPM: 56.4
2502 Female, age 75, unknown 63.6
1947 Male, age 18, unknown 60.3
1795 Male, age 51, unknown 45.3
Periaquaductal grey, dorsal
nTPM: 57.4
2850 Male, age 76, both hemispheres 63.7
2464 Female, age 72, unknown 61.3
1831 Male, age 72, unknown 57.4
1840 Male, age 53, unknown 47.3
Periaquaductal grey, lateral
nTPM: 56.0
2272 Male, age 74, both hemispheres 57.7
2053 Male, age 18, unknown 56.1
2140 Male, age 76, both hemispheres 54.0
Pretectal area
nTPM: 62.0
1815 Male, age 53, unknown 75.7
2316 Male, age 76, right hemisphere 71.8
2273 Male, age 74, both hemispheres 69.6
1817 Female, age 42, unknown 65.5
2407 Male, age 75, both hemispheres 62.8
2224 Female, age 72, unknown 60.1
2825 Male, age 18, unknown 59.9
2007 Male, age 72, unknown 58.7
2667 Female, age 75, unknown 57.1
1944 Female, age 72, unknown 52.3
1816 Male, age 51, unknown 48.2
Red nucleus
nTPM: 84.4
1821 Female, age 72, unknown 104.8
1865 Male, age 51, unknown 103.1
1904 Male, age 53, unknown 99.6
2503 Female, age 72, unknown 92.3
2227 Male, age 72, unknown 89.8
2823 Male, age 76, right hemisphere 89.2
1954 Female, age 42, unknown 88.1
2769 Male, age 72, unknown 85.2
2785 Male, age 18, unknown 82.4
2725 Female, age 75, unknown 70.7
2588 Male, age 74, left hemisphere 55.2
2584 Male, age 75, left hemisphere 52.9
Substantia nigra
nTPM: 63.1
2409 Female, age 72, unknown 75.7
2699 Male, age 18, unknown 70.0
2583 Male, age 75, right hemisphere 65.5
1889 Female, age 72, unknown 64.7
1851 Male, age 51, unknown 64.5
2590 Female, age 75, unknown 64.1
1941 Male, age 53, unknown 60.8
2241 Male, age 72, unknown 59.2
1916 Female, age 42, unknown 58.1
2665 Male, age 74, both hemispheres 48.7
Superior colliculus
nTPM: 68.6
1913 Female, age 42, unknown 95.8
1995 Male, age 72, unknown 94.0
2668 Female, age 75, unknown 72.5
1895 Male, age 76, right hemisphere 71.7
1839 Male, age 51, unknown 71.2
2587 Male, age 74, left hemisphere 65.4
2664 Male, age 75, both hemispheres 60.9
1796 Male, age 53, unknown 52.0
2261 Male, age 18, unknown 51.8
2087 Female, age 72, unknown 51.0
Ventral tegmental area
nTPM: 63.0
2223 Female, age 72, unknown 74.6
2410 Female, age 72, unknown 69.8
1915 Female, age 42, unknown 61.0
2218 Male, age 76, both hemispheres 60.3
1942 Male, age 51, unknown 57.3
2021 Male, age 53, unknown 54.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 27.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 27.8
Samples: 139

Max nTPM: 65.7
Min nTPM: 11.7
Std nTPM: 9.8
Median nTPM: 25.9
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 65.7
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 53.9
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 53.6
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 52.1
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 50.8
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 47.8
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 47.3
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 46.4
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 44.7
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 44.4
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 44.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 177.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 177.6
FF:10158-103A5 76 years, female 177.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 104.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 96.0
Samples: 4

Max nTPM: 123.5
Min nTPM: 80.2
Sample A Female 93.6
Sample B Female 80.2
Sample C Male 86.8
Sample D Male 123.5
Midbrain
nTPM: 104.6
Samples: 4

Max nTPM: 159.1
Min nTPM: 74.3
Sample A Female 159.1
Sample B Female 102.1
Sample C Male 82.7
Sample D Male 74.3
Periaqueductal gray
nTPM: 80.4
Samples: 3

Max nTPM: 87.0
Min nTPM: 74.7
Sample B Female 87.0
Sample C Male 74.7
Sample D Male 79.5
Superior colliculi
nTPM: 92.0
Samples: 4

Max nTPM: 107.8
Min nTPM: 67.3
Sample A Female 96.4
Sample B Female 67.3
Sample C Male 107.8
Sample D Male 96.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 88.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 88.8
Samples: 4

Max nTPM: 90.6
Min nTPM: 87.5
Sample A Male 87.5
Sample B Male 89.2
Sample C Female 90.6
Sample D Female 88.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.9
75851020 Antisense, RP_060601_02_G01, Mouse strain C57BL/6J (56 days, male) 1.9

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