MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:13.0 nTPM
HPA Brain:23.0 nTPM
GTEx:13.0 nTPM
FANTOM5:26.1 Scaled Tags Per Million
Pig:14.7 nTPM
Mouse:19.0 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 23.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 17.8
1870 Female, age 42, unknown 21.0
2411 Female, age 72, unknown 20.6
1827 Male, age 72, unknown 19.7
2219 Male, age 76, both hemispheres 19.6
2019 Male, age 18, unknown 18.9
1833 Male, age 53, unknown 18.4
1830 Male, age 51, unknown 16.8
2828 Female, age 72, unknown 15.4
2586 Male, age 75, left hemisphere 15.3
2666 Male, age 74, left hemisphere 12.6
Dorsal raphe nucleus
nTPM: 21.7
2298 Female, age 72, unknown 26.5
2047 Male, age 72, unknown 21.0
1828 Male, age 53, unknown 20.5
2016 Female, age 72, unknown 20.2
2750 Male, age 76, both hemispheres 20.1
Inferior colliculus
nTPM: 22.5
2097 Female, age 72, unknown 25.0
1890 Male, age 53, unknown 22.1
2849 Male, age 72, unknown 21.7
1848 Female, age 42, unknown 21.2
Median raphe nucleus
nTPM: 23.0
2220 Male, age 76, midline 23.0
Periaquaductal grey, anterior
nTPM: 19.2
1947 Male, age 18, unknown 20.6
2502 Female, age 75, unknown 19.1
1795 Male, age 51, unknown 17.7
Periaquaductal grey, dorsal
nTPM: 20.9
2850 Male, age 76, both hemispheres 23.8
1840 Male, age 53, unknown 22.0
2464 Female, age 72, unknown 20.5
1831 Male, age 72, unknown 17.2
Periaquaductal grey, lateral
nTPM: 22.4
2272 Male, age 74, both hemispheres 25.2
2140 Male, age 76, both hemispheres 21.0
2053 Male, age 18, unknown 20.9
Pretectal area
nTPM: 19.7
2667 Female, age 75, unknown 26.4
2273 Male, age 74, both hemispheres 25.5
2224 Female, age 72, unknown 22.5
1817 Female, age 42, unknown 19.5
2825 Male, age 18, unknown 19.4
1944 Female, age 72, unknown 18.8
1815 Male, age 53, unknown 18.4
1816 Male, age 51, unknown 17.5
2007 Male, age 72, unknown 17.1
2316 Male, age 76, right hemisphere 17.0
2407 Male, age 75, both hemispheres 14.9
Red nucleus
nTPM: 16.8
1821 Female, age 72, unknown 22.3
1954 Female, age 42, unknown 20.8
1904 Male, age 53, unknown 18.8
2769 Male, age 72, unknown 17.8
2227 Male, age 72, unknown 17.5
1865 Male, age 51, unknown 17.3
2503 Female, age 72, unknown 16.7
2725 Female, age 75, unknown 16.6
2823 Male, age 76, right hemisphere 15.2
2785 Male, age 18, unknown 14.3
2584 Male, age 75, left hemisphere 13.6
2588 Male, age 74, left hemisphere 10.6
Substantia nigra
nTPM: 21.0
1916 Female, age 42, unknown 29.3
2241 Male, age 72, unknown 27.2
1851 Male, age 51, unknown 23.7
2409 Female, age 72, unknown 23.0
1889 Female, age 72, unknown 22.8
2699 Male, age 18, unknown 20.9
1941 Male, age 53, unknown 19.6
2590 Female, age 75, unknown 16.8
2583 Male, age 75, right hemisphere 13.7
2665 Male, age 74, both hemispheres 13.2
Superior colliculus
nTPM: 17.6
2587 Male, age 74, left hemisphere 23.3
1895 Male, age 76, right hemisphere 22.9
1839 Male, age 51, unknown 19.6
1796 Male, age 53, unknown 18.7
2261 Male, age 18, unknown 18.1
2087 Female, age 72, unknown 15.9
2668 Female, age 75, unknown 15.4
1913 Female, age 42, unknown 15.0
1995 Male, age 72, unknown 14.8
2664 Male, age 75, both hemispheres 12.7
Ventral tegmental area
nTPM: 22.4
2410 Female, age 72, unknown 26.7
2218 Male, age 76, both hemispheres 24.8
1915 Female, age 42, unknown 23.8
1942 Male, age 51, unknown 20.3
2223 Female, age 72, unknown 19.8
2021 Male, age 53, unknown 19.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 13.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 13.0
Samples: 139

Max nTPM: 25.6
Min nTPM: 4.0
Std nTPM: 4.5
Median nTPM: 12.7
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 25.6
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 24.5
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 23.9
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 23.5
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 22.6
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 21.2
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 20.9
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 20.8
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 20.1
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 20.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 20.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 26.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 26.1
FF:10158-103A5 76 years, female 26.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 14.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 13.6
Samples: 4

Max nTPM: 16.2
Min nTPM: 11.4
Sample A Female 16.2
Sample B Female 13.3
Sample C Male 13.5
Sample D Male 11.4
Midbrain
nTPM: 13.7
Samples: 4

Max nTPM: 17.2
Min nTPM: 11.2
Sample A Female 17.2
Sample B Female 14.2
Sample C Male 12.1
Sample D Male 11.2
Periaqueductal gray
nTPM: 14.6
Samples: 3

Max nTPM: 15.2
Min nTPM: 13.8
Sample B Female 13.8
Sample C Male 15.2
Sample D Male 14.9
Superior colliculi
nTPM: 14.5
Samples: 4

Max nTPM: 16.7
Min nTPM: 12.4
Sample A Female 15.0
Sample B Female 16.7
Sample C Male 13.7
Sample D Male 12.4

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 19.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 19.0
Samples: 4

Max nTPM: 20.4
Min nTPM: 16.5
Sample A Male 20.4
Sample B Male 18.7
Sample C Female 16.5
Sample D Female 20.4

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
68844134 Antisense, RP_050217_02_H12, Mouse strain C57BL/6J (56 days, male) 0.1

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