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TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:1802.9 nTPM
HPA Brain:794.2 nTPM
GTEx:1802.9 nTPM
FANTOM5:293.2 Scaled Tags Per Million
Pig:98.1 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

794.2
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 635.6
2565 Male, age 75, midline 747.1
1981 Female, age 72, midline 712.9
2048 Male, age 55, midline 626.5
2816 Male, age 47, midline 557.9
2194 Female, age 79, both hemispheres 533.7
Cervical spinal cord, dorsal horn
nTPM: 585.9
2173 Female, age 72, unknown 824.1
2296 Male, age 66, both hemispheres 655.8
2069 Male, age 47, both hemispheres 635.5
1877 Male, age 55, unknown 592.1
2721 Male, age 90, both hemispheres 433.9
2297 Male, age 75, both hemispheres 374.0
Cervical spinal cord, ventral horn
nTPM: 794.2
2480 Male, age 75, both hemispheres 1064.8
2809 Male, age 90, both hemispheres 972.2
2098 Female, age 72, unknown 873.2
2295 Male, age 66, both hemispheres 778.4
2068 Male, age 55, unknown 600.6
2820 Female, age 79, both hemispheres 476.1

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1802.9
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 1802.9
Samples: 159

Max nTPM: 3493.8
Min nTPM: 649.9
Std nTPM: 579.3
Median nTPM: 1711.3
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 3493.8
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 3493.2
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 3354.8
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 3305.4
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 3153.9
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 3088.4
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 3008.5
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 2983.8
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 2941.9
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 2886.6
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 2787.2
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 2786.0
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 2747.1
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 2745.4
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 2604.3
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 2602.3
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 2572.4
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 2518.1
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 2509.8
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 2502.3
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 2480.9
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 2467.3
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 2426.5
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 2387.3
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 2384.5
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 2381.8
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 2380.9
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 2333.1
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 2320.9
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 2315.6
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 2302.6
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 2296.7
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 2295.3
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 2240.6
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 2217.1
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 2166.4
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 2164.1
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 2133.3
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 2131.5
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 2100.3
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 2093.4
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 2091.4
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 2078.1
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 2074.6
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 2068.6
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 2059.6
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 2047.4
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 2032.1
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 2020.1
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 2019.5
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 2017.7
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 2015.9
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 2013.6
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 1961.8
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 1959.5
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 1942.4
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 1933.9
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 1921.8
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 1907.7
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 1891.6
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 1883.6
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 1882.5
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 1832.2
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 1812.5
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 1810.1
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 1802.8
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 1802.0
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 1801.0
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 1788.9
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 1783.1
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 1778.3
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 1772.7
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 1764.9
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 1757.1
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 1738.3
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 1736.0
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 1733.5
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 1726.2
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 1720.3
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 1711.3
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 1706.7
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 1695.7
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 1695.1
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 1685.9
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 1681.8
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 1680.8
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 1673.4
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 1663.1
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 1660.3
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 1653.0
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 1652.1
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 1637.3
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 1626.3
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 1619.5
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 1618.2
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 1602.1
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 1595.7
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 1588.8
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 1582.0
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 1569.0
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 1568.8
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 1567.3
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 1517.3
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 1511.3
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 1497.6
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 1482.7
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 1470.3
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 1467.5
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 1456.3
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 1451.5
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 1444.1
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 1429.7
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 1426.2
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 1425.9
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 1423.3
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 1411.0
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 1408.2
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 1395.8
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 1392.6
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 1386.3
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 1368.8
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 1364.6
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 1364.5
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 1349.7
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 1345.7
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 1327.5
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 1319.0
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 1317.0
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 1316.4
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 1303.2
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 1294.5
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 1285.4
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 1284.5
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 1280.7
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 1273.6
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 1256.3
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 1244.1
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 1240.5
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 1216.8
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 1192.4
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 1179.7
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 1176.5
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 1149.7
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 1135.0
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 1131.5
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 1085.6
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 1065.3
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 1050.4
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 1047.6
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 1041.2
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 1002.6
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 1001.7
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 988.5
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 977.9
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 920.8
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 796.3
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 793.8
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 699.6
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 649.9
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

293.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 293.2
FF:10181-103D1 60 years, female 390.6
FF:10159-103A6 76 years, female 195.8

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

98.1
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 98.1
Samples: 4

Max nTPM: 138.2
Min nTPM: 68.7
Sample A Female 68.7
Sample B Female 110.3
Sample C Male 138.2
Sample D Male 75.1
Ventral spinal cord
nTPM: 85.5
Samples: 4

Max nTPM: 95.4
Min nTPM: 65.5
Sample A Female 65.5
Sample B Female 90.9
Sample C Male 95.4
Sample D Male 90.3

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