MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:3.7 nTPM
HPA Brain:10.0 nTPM
GTEx:3.7 nTPM
FANTOM5:14.7 Scaled Tags Per Million
Pig:11.9 nTPM
Mouse:11.0 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 10.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 8.5
2219 Male, age 76, both hemispheres 10.0
1833 Male, age 53, unknown 9.6
2411 Female, age 72, unknown 9.4
1827 Male, age 72, unknown 9.0
1830 Male, age 51, unknown 8.6
2666 Male, age 74, left hemisphere 8.5
1870 Female, age 42, unknown 8.4
2019 Male, age 18, unknown 7.9
2828 Female, age 72, unknown 7.9
2586 Male, age 75, left hemisphere 5.7
Dorsal raphe nucleus
nTPM: 8.7
2298 Female, age 72, unknown 9.2
2016 Female, age 72, unknown 8.7
1828 Male, age 53, unknown 8.6
2750 Male, age 76, both hemispheres 8.6
2047 Male, age 72, unknown 8.4
Inferior colliculus
nTPM: 9.8
2097 Female, age 72, unknown 10.6
1848 Female, age 42, unknown 9.9
1890 Male, age 53, unknown 9.8
2849 Male, age 72, unknown 9.1
Median raphe nucleus
nTPM: 8.4
2220 Male, age 76, midline 8.4
Periaquaductal grey, anterior
nTPM: 8.4
2502 Female, age 75, unknown 8.9
1947 Male, age 18, unknown 8.7
1795 Male, age 51, unknown 7.4
Periaquaductal grey, dorsal
nTPM: 8.6
1840 Male, age 53, unknown 9.1
2464 Female, age 72, unknown 9.0
1831 Male, age 72, unknown 8.9
2850 Male, age 76, both hemispheres 7.6
Periaquaductal grey, lateral
nTPM: 8.3
2053 Male, age 18, unknown 8.6
2272 Male, age 74, both hemispheres 8.3
2140 Male, age 76, both hemispheres 8.0
Pretectal area
nTPM: 8.8
2273 Male, age 74, both hemispheres 9.5
2825 Male, age 18, unknown 9.4
2224 Female, age 72, unknown 9.1
1815 Male, age 53, unknown 8.8
1816 Male, age 51, unknown 8.7
2007 Male, age 72, unknown 8.7
1817 Female, age 42, unknown 8.6
2407 Male, age 75, both hemispheres 8.6
2316 Male, age 76, right hemisphere 8.5
2667 Female, age 75, unknown 8.3
1944 Female, age 72, unknown 8.1
Red nucleus
nTPM: 8.3
1821 Female, age 72, unknown 9.7
2725 Female, age 75, unknown 9.4
1865 Male, age 51, unknown 8.6
2769 Male, age 72, unknown 8.6
2503 Female, age 72, unknown 8.5
2588 Male, age 74, left hemisphere 8.4
2823 Male, age 76, right hemisphere 8.4
1954 Female, age 42, unknown 8.2
1904 Male, age 53, unknown 8.1
2227 Male, age 72, unknown 7.6
2785 Male, age 18, unknown 7.5
2584 Male, age 75, left hemisphere 7.1
Substantia nigra
nTPM: 10.0
2241 Male, age 72, unknown 12.4
1916 Female, age 42, unknown 11.9
1851 Male, age 51, unknown 10.4
2409 Female, age 72, unknown 10.3
2699 Male, age 18, unknown 9.8
1889 Female, age 72, unknown 9.6
1941 Male, age 53, unknown 9.5
2583 Male, age 75, right hemisphere 9.2
2590 Female, age 75, unknown 8.4
2665 Male, age 74, both hemispheres 8.2
Superior colliculus
nTPM: 8.4
1913 Female, age 42, unknown 9.3
1895 Male, age 76, right hemisphere 9.1
2587 Male, age 74, left hemisphere 8.9
1796 Male, age 53, unknown 8.8
1839 Male, age 51, unknown 8.6
2261 Male, age 18, unknown 8.6
2668 Female, age 75, unknown 8.6
2087 Female, age 72, unknown 7.8
1995 Male, age 72, unknown 7.2
2664 Male, age 75, both hemispheres 7.0
Ventral tegmental area
nTPM: 9.8
1915 Female, age 42, unknown 10.8
2410 Female, age 72, unknown 10.4
2218 Male, age 76, both hemispheres 9.9
1942 Male, age 51, unknown 9.6
2223 Female, age 72, unknown 9.6
2021 Male, age 53, unknown 8.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 3.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 3.7
Samples: 139

Max nTPM: 6.1
Min nTPM: 2.1
Std nTPM: 0.7
Median nTPM: 3.5
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 6.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 5.8
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 5.7
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 5.7
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 5.2
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 5.2
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 5.2
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 5.1
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 5.0
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 4.9
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 4.8
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 14.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 14.7
FF:10158-103A5 76 years, female 14.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 11.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 11.7
Samples: 4

Max nTPM: 12.2
Min nTPM: 10.6
Sample A Female 12.1
Sample B Female 12.2
Sample C Male 10.6
Sample D Male 11.8
Midbrain
nTPM: 11.3
Samples: 4

Max nTPM: 13.7
Min nTPM: 8.7
Sample A Female 13.0
Sample B Female 13.7
Sample C Male 8.7
Sample D Male 9.9
Periaqueductal gray
nTPM: 11.9
Samples: 3

Max nTPM: 12.8
Min nTPM: 11.4
Sample B Female 12.8
Sample C Male 11.4
Sample D Male 11.4
Superior colliculi
nTPM: 11.2
Samples: 4

Max nTPM: 11.9
Min nTPM: 9.8
Sample A Female 11.6
Sample B Female 11.9
Sample C Male 9.8
Sample D Male 11.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 11.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 11.0
Samples: 4

Max nTPM: 11.9
Min nTPM: 10.2
Sample A Male 10.2
Sample B Male 10.9
Sample C Female 11.9
Sample D Female 10.9

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
80342215 Antisense, RP_080109_01_B08, Mouse strain C57BL/6J (56 days, male) 0.1

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