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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
63.1
nTPM
Monaco:
100.1
nTPM
Schmiedel:
30.6
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
63.1
HPA sample
nTPM
Classical monocyte nTPM: 59.2
Samples: 6
Max nTPM: 87.4
Min nTPM: 39.4
P10809_1003
39.4
P10809_1020
68.9
P10809_1039
87.4
P10809_1058
40.7
P10809_1080
74.5
P10809_1107
44.1
Intermediate monocyte nTPM: 63.1
Samples: 6
Max nTPM: 86.6
Min nTPM: 42.7
P10809_1004
59.0
P10809_1023
86.6
P10809_1042
77.8
P10809_1061
47.0
P10809_1081
65.4
P10809_1108
42.7
Non-classical monocyte nTPM: 54.8
Samples: 5
Max nTPM: 70.7
Min nTPM: 38.4
P10809_1005
61.3
P10809_1053
70.7
P10809_1072
38.4
P10809_1082
51.2
P10809_1109
52.6
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
100.1
Monaco sample
nTPM
Classical monocyte nTPM: 100.1
Samples: 4
Max nTPM: 116.2
Min nTPM: 88.1
RHH5313_R3680
116.2
RHH5221_R3593
96.5
RHH5250_R3622
99.5
RHH5279_R3651
88.1
Intermediate monocyte nTPM: 80.8
Samples: 4
Max nTPM: 88.7
Min nTPM: 66.6
RHH5314_R3681
88.7
RHH5222_R3594
83.7
RHH5251_R3623
66.6
RHH5280_R3652
84.2
Non-classical monocyte nTPM: 90.4
Samples: 4
Max nTPM: 121.9
Min nTPM: 73.1
RHH5315_R3682
121.9
RHH5223_R3595
89.8
RHH5252_R3624
73.1
RHH5281_R3653
76.7
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
The Human Protein Atlas project is funded
