MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:10.1 nTPM
HPA Brain:24.0 nTPM
GTEx:10.1 nTPM
FANTOM5:80.5 Scaled Tags Per Million
Pig:17.2 nTPM
Mouse:68.4 nTPM
Allen mouse:1.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 24.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 20.4
2411 Female, age 72, unknown 23.7
2019 Male, age 18, unknown 22.4
2828 Female, age 72, unknown 21.5
1827 Male, age 72, unknown 21.1
1870 Female, age 42, unknown 21.0
2666 Male, age 74, left hemisphere 19.5
2586 Male, age 75, left hemisphere 19.4
1830 Male, age 51, unknown 18.7
1833 Male, age 53, unknown 18.4
2219 Male, age 76, both hemispheres 18.2
Dorsal raphe nucleus
nTPM: 22.7
2298 Female, age 72, unknown 27.6
2047 Male, age 72, unknown 22.2
2750 Male, age 76, both hemispheres 22.0
1828 Male, age 53, unknown 21.0
2016 Female, age 72, unknown 20.6
Inferior colliculus
nTPM: 20.5
2097 Female, age 72, unknown 25.1
1848 Female, age 42, unknown 20.1
1890 Male, age 53, unknown 19.5
2849 Male, age 72, unknown 17.2
Median raphe nucleus
nTPM: 21.3
2220 Male, age 76, midline 21.3
Periaquaductal grey, anterior
nTPM: 22.4
2502 Female, age 75, unknown 24.9
1947 Male, age 18, unknown 22.5
1795 Male, age 51, unknown 19.8
Periaquaductal grey, dorsal
nTPM: 21.2
1840 Male, age 53, unknown 23.5
1831 Male, age 72, unknown 22.8
2464 Female, age 72, unknown 21.2
2850 Male, age 76, both hemispheres 17.4
Periaquaductal grey, lateral
nTPM: 19.9
2053 Male, age 18, unknown 21.0
2272 Male, age 74, both hemispheres 20.0
2140 Male, age 76, both hemispheres 18.7
Pretectal area
nTPM: 24.0
1816 Male, age 51, unknown 30.8
1944 Female, age 72, unknown 28.5
2007 Male, age 72, unknown 26.1
2273 Male, age 74, both hemispheres 24.9
2224 Female, age 72, unknown 24.7
1815 Male, age 53, unknown 24.0
1817 Female, age 42, unknown 22.9
2316 Male, age 76, right hemisphere 22.7
2667 Female, age 75, unknown 20.1
2825 Male, age 18, unknown 19.6
2407 Male, age 75, both hemispheres 19.3
Red nucleus
nTPM: 20.6
2503 Female, age 72, unknown 24.2
2785 Male, age 18, unknown 23.0
1821 Female, age 72, unknown 22.9
1904 Male, age 53, unknown 20.9
2588 Male, age 74, left hemisphere 20.8
1865 Male, age 51, unknown 20.7
2769 Male, age 72, unknown 20.5
2823 Male, age 76, right hemisphere 20.2
2725 Female, age 75, unknown 19.7
1954 Female, age 42, unknown 18.6
2227 Male, age 72, unknown 18.5
2584 Male, age 75, left hemisphere 16.6
Substantia nigra
nTPM: 22.5
2590 Female, age 75, unknown 26.1
2241 Male, age 72, unknown 25.5
1851 Male, age 51, unknown 24.3
1916 Female, age 42, unknown 23.1
1889 Female, age 72, unknown 22.8
2409 Female, age 72, unknown 22.7
1941 Male, age 53, unknown 22.6
2583 Male, age 75, right hemisphere 20.7
2665 Male, age 74, both hemispheres 20.2
2699 Male, age 18, unknown 16.6
Superior colliculus
nTPM: 22.6
2087 Female, age 72, unknown 29.6
2261 Male, age 18, unknown 27.7
2587 Male, age 74, left hemisphere 22.5
1796 Male, age 53, unknown 22.4
1913 Female, age 42, unknown 21.7
1895 Male, age 76, right hemisphere 21.4
2668 Female, age 75, unknown 21.0
1995 Male, age 72, unknown 20.9
1839 Male, age 51, unknown 19.5
2664 Male, age 75, both hemispheres 19.5
Ventral tegmental area
nTPM: 21.9
1915 Female, age 42, unknown 24.0
2021 Male, age 53, unknown 23.1
2410 Female, age 72, unknown 22.8
1942 Male, age 51, unknown 21.3
2218 Male, age 76, both hemispheres 20.9
2223 Female, age 72, unknown 19.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 10.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 10.1
Samples: 139

Max nTPM: 16.6
Min nTPM: 7.0
Std nTPM: 1.8
Median nTPM: 9.7
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 16.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 15.4
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 15.0
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 14.9
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 14.7
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 14.3
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 14.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 14.0
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 13.5
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 13.2
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 13.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 80.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 80.5
FF:10158-103A5 76 years, female 80.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 17.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 16.2
Samples: 4

Max nTPM: 19.6
Min nTPM: 12.7
Sample A Female 19.6
Sample B Female 15.3
Sample C Male 17.1
Sample D Male 12.7
Midbrain
nTPM: 17.2
Samples: 4

Max nTPM: 19.0
Min nTPM: 13.5
Sample A Female 13.5
Sample B Female 18.3
Sample C Male 19.0
Sample D Male 17.9
Periaqueductal gray
nTPM: 15.6
Samples: 3

Max nTPM: 16.5
Min nTPM: 14.7
Sample B Female 15.6
Sample C Male 16.5
Sample D Male 14.7
Superior colliculi
nTPM: 16.6
Samples: 4

Max nTPM: 18.7
Min nTPM: 14.9
Sample A Female 16.1
Sample B Female 14.9
Sample C Male 18.7
Sample D Male 16.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 68.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 68.5
Samples: 4

Max nTPM: 71.7
Min nTPM: 63.2
Sample A Male 63.2
Sample B Male 69.9
Sample C Female 71.7
Sample D Female 69.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.6
393196 Antisense, RP_040804_02_C04, Mouse strain C57BL/6J (56 days, male) 2.5
70919531 Antisense, RP_050713_01_E07, Mouse strain C57BL/6J (56 days, male) 0.7

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