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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Low
Neuronal cells:
Low
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
19.4
nTPM
HPA Brain:
163.5
nTPM
GTEx:
19.4
nTPM
FANTOM5:
172.4
Scaled Tags Per Million
Pig:
143.4
nTPM
Mouse:
67.7
nTPM
Allen mouse:
6.4
Expression energy
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA003345
Antibody CAB026120
Glial cells
High
Low
Neuronal cells
High
Low
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
163.5
Sample id
Sample description
nTPM
Hippocampus nTPM: 116.1
1898
Male, age 80, left hemisphere
153.7
1911
Female, age 85, right hemisphere
125.1
2529
Female, age 94, left hemisphere
121.2
2621
Female, age 67, right hemisphere
111.9
1855
Male, age 76, left hemisphere
96.9
2148
Female, age 91, left hemisphere
88.1
Dentate gyrus nTPM: 107.0
1927
Female, age 91, both hemispheres
128.4
2246
Female, age 85, both hemispheres
124.7
2531
Female, age 67, both hemispheres
117.4
2528
Male, age 74, both hemispheres
98.8
2010
Male, age 76, both hemispheres
94.9
2530
Female, age 94, left hemisphere
77.8
Entorhinal gyrus nTPM: 119.4
1938
Female, age 85, left hemisphere
145.5
1787
Male, age 76, left hemisphere
134.3
2764
Male, age 80, right hemisphere
127.6
2117
Female, age 91, right hemisphere
104.7
2613
Female, age 94, left hemisphere
103.3
2686
Male, age 75, right hemisphere
100.8
Hippocampus, CA1 nTPM: 122.5
2749
Male, age 80, left hemisphere
163.8
2045
Male, age 76, both hemispheres
123.3
1873
Female, age 85, both hemispheres
118.5
2527
Male, age 74, both hemispheres
116.9
2082
Female, age 91, right hemisphere
90.0
Hippocampus, CA2 nTPM: 116.7
1892
Male, age 76, both hemispheres
180.8
2437
Female, age 94, left hemisphere
117.7
2113
Female, age 91, right hemisphere
104.3
2249
Male, age 74, both hemispheres
102.1
1940
Female, age 85, left hemisphere
99.3
1963
Male, age 80, left hemisphere
96.2
Hippocampus, CA3 nTPM: 134.6
1867
Male, age 76, both hemispheres
164.6
2137
Male, age 80, left hemisphere
157.2
2620
Female, age 94, left hemisphere
142.2
1891
Female, age 85, both hemispheres
137.9
2861
Female, age 67, both hemispheres
110.3
2436
Male, age 74, both hemispheres
95.3
Parahippocampal cortex nTPM: 136.5
1850
Male, age 80, both hemispheres
165.3
2250
Female, age 67, right hemisphere
160.0
2693
Female, age 94, both hemispheres
143.5
2245
Female, age 91, both hemispheres
143.3
1933
Female, age 85, both hemispheres
136.1
2018
Male, age 76, both hemispheres
134.0
1990
Female, age 91, right hemisphere
130.8
2622
Female, age 67, right hemisphere
129.3
2532
Female, age 72, left hemisphere
118.7
2692
Male, age 74, both hemispheres
103.9
Perirhinal gyrus nTPM: 163.5
1794
Male, age 80, right hemisphere
182.2
1847
Female, age 91, left hemisphere
176.1
1841
Female, age 85, right hemisphere
173.0
2848
Male, age 76, right hemisphere
149.7
2521
Female, age 94, right hemisphere
136.6
Subiculum nTPM: 119.6
1901
Male, age 80, both hemispheres
157.6
1977
Female, age 85, both hemispheres
145.9
2438
Female, age 94, left hemisphere
119.0
2619
Male, age 74, both hemispheres
113.6
2729
Female, age 91, right hemisphere
97.1
2042
Male, age 76, both hemispheres
84.6
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
19.4
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 19.4
Samples: 197
Max nTPM: 55.0
Min nTPM: 3.3
Std nTPM: 9.3
Median nTPM: 17.8
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
55.0
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
46.1
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
45.9
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
45.9
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
42.8
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
42.1
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
40.1
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
39.1
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
38.4
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
38.2
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
36.2
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
36.1
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
35.7
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
35.6
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
35.3
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
35.3
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
34.5
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
34.0
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
33.1
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
32.0
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
31.6
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
30.8
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
30.4
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
29.8
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
29.7
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
29.5
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
29.1
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
28.8
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
28.5
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
28.5
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
28.5
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
28.1
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
28.1
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
27.8
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
26.8
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
26.7
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
26.6
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
26.3
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
26.1
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
26.1
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
25.5
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
25.3
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
25.2
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
25.0
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
24.8
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
24.7
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
24.6
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
24.6
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
24.5
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
24.3
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
24.3
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
24.2
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
24.1
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
23.9
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
23.7
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
23.5
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
23.3
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
23.1
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
23.0
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
22.7
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
22.6
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
22.2
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
22.2
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
22.1
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
22.0
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
21.9
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
21.8
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
21.6
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
21.5
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
21.4
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
21.2
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
21.2
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
21.1
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
21.0
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
20.9
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
20.9
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
20.9
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
20.4
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
20.4
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
20.2
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
20.2
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
20.0
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
19.9
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
19.8
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
19.4
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
19.4
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
18.9
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
18.8
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
18.7
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
18.7
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
18.7
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
18.7
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
18.6
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
18.4
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
18.3
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
18.3
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
18.2
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
18.1
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
17.8
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
17.8
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
17.7
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
17.6
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
17.5
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
17.5
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
17.5
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
17.3
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
17.2
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
17.2
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
17.2
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
16.7
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
16.4
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
16.3
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
16.2
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
16.2
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
16.2
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
16.2
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
16.1
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
16.1
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
15.9
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
15.7
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
15.7
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
15.7
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
15.6
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
15.6
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
15.5
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
15.3
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
15.3
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
15.2
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
15.2
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
15.1
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
15.1
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
14.9
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
14.7
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
14.4
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
14.4
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
14.2
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
14.2
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
14.1
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
14.1
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
14.0
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
13.9
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
13.9
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
13.7
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
13.4
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
13.3
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
13.2
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
13.0
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
12.9
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
12.9
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
12.7
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
12.5
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
12.3
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
12.3
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
12.2
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
12.1
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
12.0
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
11.6
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
11.6
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
11.5
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
11.5
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
11.5
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
11.3
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
10.9
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
10.9
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
10.7
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
10.7
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
10.4
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
10.1
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
10.0
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
10.0
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
9.8
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
9.5
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
8.7
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
8.3
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
8.2
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
8.1
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
8.1
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
8.0
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
8.0
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
7.7
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
7.7
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
7.5
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
7.4
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
7.1
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
6.4
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
6.4
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
6.4
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
6.4
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
6.3
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
6.2
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
6.1
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
5.9
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
5.7
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
5.6
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
4.1
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
3.9
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
3.3
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
67.7
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 67.7
Samples: 4
Max nTPM: 84.4
Min nTPM: 59.2
Sample A
Male
59.2
Sample B
Male
62.9
Sample C
Female
64.3
Sample D
Female
84.4
Hippocampal formation nTPM: 57.8
Samples: 4
Max nTPM: 68.8
Min nTPM: 49.2
Sample A
Male
55.8
Sample B
Male
68.8
Sample C
Female
57.4
Sample D
Female
49.2
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.