MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:91.6 nTPM
HPA Brain:161.7 nTPM
GTEx:91.6 nTPM
FANTOM5:21.4 Scaled Tags Per Million
Pig:117.9 nTPM
Mouse:68.6 nTPM
Allen mouse:17.4 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 161.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 126.3
2586 Male, age 75, left hemisphere 161.8
2019 Male, age 18, unknown 160.5
2219 Male, age 76, both hemispheres 153.0
2666 Male, age 74, left hemisphere 151.9
1827 Male, age 72, unknown 137.8
2828 Female, age 72, unknown 128.4
2411 Female, age 72, unknown 100.3
1833 Male, age 53, unknown 90.8
1870 Female, age 42, unknown 90.1
1830 Male, age 51, unknown 88.1
Dorsal raphe nucleus
nTPM: 119.6
2047 Male, age 72, unknown 142.1
1828 Male, age 53, unknown 134.1
2298 Female, age 72, unknown 122.8
2750 Male, age 76, both hemispheres 115.4
2016 Female, age 72, unknown 83.3
Inferior colliculus
nTPM: 111.0
1890 Male, age 53, unknown 116.7
1848 Female, age 42, unknown 113.9
2097 Female, age 72, unknown 112.6
2849 Male, age 72, unknown 100.9
Median raphe nucleus
nTPM: 143.6
2220 Male, age 76, midline 143.6
Periaquaductal grey, anterior
nTPM: 140.1
1795 Male, age 51, unknown 149.6
2502 Female, age 75, unknown 141.2
1947 Male, age 18, unknown 129.7
Periaquaductal grey, dorsal
nTPM: 100.9
1831 Male, age 72, unknown 110.8
1840 Male, age 53, unknown 104.8
2850 Male, age 76, both hemispheres 97.2
2464 Female, age 72, unknown 90.9
Periaquaductal grey, lateral
nTPM: 79.3
2140 Male, age 76, both hemispheres 85.3
2053 Male, age 18, unknown 81.5
2272 Male, age 74, both hemispheres 71.2
Pretectal area
nTPM: 146.8
2007 Male, age 72, unknown 217.0
1816 Male, age 51, unknown 213.4
1817 Female, age 42, unknown 209.7
1944 Female, age 72, unknown 200.9
2667 Female, age 75, unknown 159.5
1815 Male, age 53, unknown 157.7
2407 Male, age 75, both hemispheres 103.7
2224 Female, age 72, unknown 96.3
2825 Male, age 18, unknown 94.6
2273 Male, age 74, both hemispheres 82.4
2316 Male, age 76, right hemisphere 79.7
Red nucleus
nTPM: 99.7
2785 Male, age 18, unknown 146.5
2588 Male, age 74, left hemisphere 111.8
2584 Male, age 75, left hemisphere 111.6
1821 Female, age 72, unknown 107.7
1954 Female, age 42, unknown 101.4
2725 Female, age 75, unknown 97.5
2823 Male, age 76, right hemisphere 89.3
2769 Male, age 72, unknown 87.9
1865 Male, age 51, unknown 86.4
2503 Female, age 72, unknown 86.3
1904 Male, age 53, unknown 85.6
2227 Male, age 72, unknown 84.3
Substantia nigra
nTPM: 161.7
2665 Male, age 74, both hemispheres 261.2
1916 Female, age 42, unknown 221.5
1941 Male, age 53, unknown 204.8
1889 Female, age 72, unknown 178.1
1851 Male, age 51, unknown 172.2
2241 Male, age 72, unknown 136.9
2409 Female, age 72, unknown 124.6
2699 Male, age 18, unknown 115.6
2583 Male, age 75, right hemisphere 102.3
2590 Female, age 75, unknown 99.8
Superior colliculus
nTPM: 126.3
2664 Male, age 75, both hemispheres 190.9
2087 Female, age 72, unknown 166.6
2668 Female, age 75, unknown 160.5
1796 Male, age 53, unknown 126.9
2261 Male, age 18, unknown 125.8
1895 Male, age 76, right hemisphere 116.7
1839 Male, age 51, unknown 104.7
2587 Male, age 74, left hemisphere 103.1
1913 Female, age 42, unknown 85.7
1995 Male, age 72, unknown 82.6
Ventral tegmental area
nTPM: 127.8
2218 Male, age 76, both hemispheres 161.7
2410 Female, age 72, unknown 151.7
1915 Female, age 42, unknown 151.1
1942 Male, age 51, unknown 122.3
2021 Male, age 53, unknown 96.2
2223 Female, age 72, unknown 83.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 91.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 91.6
Samples: 183

Max nTPM: 345.5
Min nTPM: 10.3
Std nTPM: 54.1
Median nTPM: 83.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 345.5
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 270.1
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 242.1
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 234.4
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 208.4
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 205.0
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 203.2
GTEX-1PPGY-0011-R2b-SM-F33YW 60-69 years, male 199.5
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 190.6
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 179.0
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 176.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 21.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 21.4
FF:10158-103A5 76 years, female 21.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 117.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 106.2
Samples: 4

Max nTPM: 157.6
Min nTPM: 41.7
Sample A Female 157.6
Sample B Female 73.0
Sample C Male 152.4
Sample D Male 41.7
Midbrain
nTPM: 116.9
Samples: 4

Max nTPM: 250.2
Min nTPM: 46.9
Sample A Female 46.9
Sample B Female 75.8
Sample C Male 250.2
Sample D Male 94.5
Periaqueductal gray
nTPM: 74.5
Samples: 3

Max nTPM: 101.3
Min nTPM: 58.9
Sample B Female 63.4
Sample C Male 101.3
Sample D Male 58.9
Superior colliculi
nTPM: 117.9
Samples: 4

Max nTPM: 198.6
Min nTPM: 64.1
Sample A Female 108.9
Sample B Female 64.1
Sample C Male 198.6
Sample D Male 100.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 68.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 68.6
Samples: 4

Max nTPM: 71.8
Min nTPM: 62.7
Sample A Male 69.6
Sample B Male 62.7
Sample C Female 71.8
Sample D Female 70.2

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 17.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 17.4
583550 Antisense, RP_040831_02_G08, Mouse strain C57BL/6J (56 days, male) 17.4

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