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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
1349.0
Sample id
Sample description
nTPM
Anterior cochlear nucleus, ventral nTPM: 719.7
2301
Female, age 85, both hemispheres
788.2
2188
Female, age 91, both hemispheres
763.3
1984
Male, age 76, both hemispheres
747.7
2090
Male, age 80, both hemispheres
579.5
Dorsal cochlear nucleus nTPM: 703.0
2187
Female, age 91, both hemispheres
845.2
2802
Male, age 74, right hemisphere
767.2
2058
Male, age 76, both hemispheres
765.1
2370
Male, age 61, both hemispheres
592.7
2378
Male, age 80, both hemispheres
544.8
Dorsal tegmental nucleus nTPM: 770.0
2083
Male, age 80, both hemispheres
837.5
2358
Male, age 61, both hemispheres
771.8
2326
Male, age 74, both hemispheres
755.2
1936
Male, age 76, left hemisphere
715.4
Dorsolateral tegmental area nTPM: 690.5
2751
Female, age 85, both hemispheres
800.7
2654
Male, age 80, both hemispheres
786.8
2141
Male, age 76, both hemispheres
689.4
2360
Male, age 74, both hemispheres
628.8
2337
Male, age 61, both hemispheres
546.8
Kolliker-Fuse nucleus nTPM: 875.6
2163
Male, age 80, both hemispheres
1219.0
2793
Female, age 91, left hemisphere
764.8
2315
Male, age 76, right hemisphere
643.0
Lateral lemniscal nuclei nTPM: 971.7
2169
Male, age 76, both hemispheres
1225.9
2036
Male, age 80, both hemispheres
1010.5
2453
Male, age 74, right hemisphere
970.3
2746
Female, age 85, left hemisphere
949.1
2320
Female, age 91, left hemisphere
702.5
Lateral parabrachial nucleus nTPM: 784.2
2139
Female, age 85, right hemisphere
1049.5
2790
Male, age 61, both hemispheres
830.1
2013
Male, age 80, both hemispheres
746.2
2792
Male, age 76, both hemispheres
511.1
Lateral vestibular nucleus nTPM: 997.6
2184
Male, age 76, both hemispheres
1267.4
2311
Male, age 80, both hemispheres
727.8
Locus coeruleus nTPM: 1349.0
2123
Female, age 91, both hemispheres
1882.1
2014
Male, age 55, unknown
1435.4
2720
Male, age 74, both hemispheres
1429.7
1980
Male, age 76, both hemispheres
1313.2
2788
Male, age 74, unknown
1241.7
2317
Female, age 72, unknown
1122.8
2162
Male, age 80, both hemispheres
1017.8
Medial parabrachial nucleus nTPM: 851.5
2170
Female, age 91, both hemispheres
970.9
2156
Male, age 61, both hemispheres
924.9
2854
Male, age 80, both hemispheres
876.2
2463
Female, age 85, right hemisphere
758.4
2786
Male, age 76, both hemispheres
727.0
Medial periolivary nuclei nTPM: 958.4
2171
Female, age 85, both hemispheres
1394.6
2063
Male, age 76, both hemispheres
1251.5
2791
Male, age 74, right hemisphere
867.0
2458
Female, age 91, both hemispheres
661.3
2081
Male, age 80, both hemispheres
617.6
Motor facial nucleus nTPM: 960.2
2062
Male, age 76, both hemispheres
1331.6
2365
Male, age 74, right hemisphere
1033.7
2697
Female, age 85, both hemispheres
956.3
2327
Male, age 80, both hemispheres
896.1
2126
Male, age 61, both hemispheres
799.3
2795
Female, age 91, both hemispheres
744.3
Motor trigeminal nucleus nTPM: 765.6
2079
Male, age 80, both hemispheres
928.6
2560
Male, age 74, both hemispheres
759.3
2309
Male, age 76, both hemispheres
722.6
2321
Female, age 91, both hemispheres
711.7
2335
Male, age 61, both hemispheres
705.7
Nuclei of the trapezoid body nTPM: 1119.0
2159
Male, age 61, both hemispheres
1531.9
2735
Female, age 85, both hemispheres
1278.3
1983
Male, age 76, both hemispheres
1212.4
2166
Male, age 80, both hemispheres
851.6
2368
Female, age 91, both hemispheres
720.7
Nucleus raphe magnus nTPM: 1191.0
2160
Male, age 61, both hemispheres
1956.5
2172
Female, age 85, both hemispheres
1425.5
2455
Male, age 74, both hemispheres
1223.8
2328
Male, age 80, both hemispheres
912.3
2051
Male, age 76, both hemispheres
900.7
2459
Female, age 91, both hemispheres
727.0
Paramedian reticular nucleus nTPM: 1004.7
2050
Female, age 85, both hemispheres
1106.1
2057
Male, age 80, both hemispheres
1089.5
2313
Male, age 61, both hemispheres
1039.3
2052
Male, age 76, both hemispheres
783.7
Pedunculopontine tegmental nucleus nTPM: 808.9
2334
Male, age 80, both hemispheres
873.1
2338
Male, age 61, both hemispheres
815.9
1921
Female, age 85, both hemispheres
737.9
Pontine nuclei nTPM: 1185.2
2727
Male, age 61, right hemisphere
1834.3
1863
Male, age 55, unknown
1667.7
2109
Female, age 72, unknown
1343.6
2787
Female, age 85, both hemispheres
1319.7
1968
Male, age 76, left hemisphere
1123.2
2454
Male, age 74, left hemisphere
884.0
2319
Female, age 91, both hemispheres
667.8
2115
Male, age 80, left hemisphere
641.1
Pontine raphe nucleus nTPM: 1013.7
2122
Female, age 85, midline
1148.1
2853
Male, age 76, midline
879.3
Posteroventral cochlear nucleus nTPM: 702.0
2070
Male, age 76, both hemispheres
913.0
2752
Female, age 85, both hemispheres
886.5
2371
Male, age 61, both hemispheres
598.6
2341
Male, age 80, both hemispheres
579.8
2135
Female, age 91, both hemispheres
532.1
Principal sensory trigeminal nucleus nTPM: 1114.4
2158
Male, age 61, both hemispheres
1638.9
2324
Male, age 76, both hemispheres
1072.6
2008
Male, age 80, left hemisphere
1020.8
2367
Female, age 91, left hemisphere
725.2
Reticular pontine nucleus, caudal nTPM: 839.5
2332
Male, age 80, right hemisphere
978.8
2092
Male, age 76, both hemispheres
918.8
2559
Male, age 74, both hemispheres
755.0
2457
Female, age 91, both hemispheres
705.5
Reticular pontine nucleus, oral nTPM: 871.1
2361
Male, age 74, both hemispheres
1006.6
2012
Female, age 85, both hemispheres
1004.3
1939
Male, age 80, both hemispheres
887.7
2167
Male, age 76, both hemispheres
775.4
2366
Female, age 91, both hemispheres
681.4
Reticulotegmental nucleus nTPM: 887.4
2325
Male, age 76, both hemispheres
1022.7
2452
Male, age 74, both hemispheres
930.5
2322
Female, age 91, both hemispheres
833.5
2333
Male, age 80, both hemispheres
762.9
Spinal trigeminal nucleus, oral nTPM: 896.4
2164
Male, age 80, both hemispheres
1088.0
2737
Female, age 85, both hemispheres
926.8
1978
Male, age 76, both hemispheres
674.5
Subcoeruleus area nTPM: 835.4
2323
Female, age 91, left hemisphere
954.5
1958
Male, age 80, both hemispheres
942.4
2089
Male, age 76, left hemisphere
876.7
2451
Male, age 74, both hemispheres
738.0
2369
Female, age 85, left hemisphere
665.5
Superior olive nTPM: 912.9
1875
Female, age 85, both hemispheres
1207.4
2364
Male, age 74, right hemisphere
947.5
2020
Male, age 76, both hemispheres
867.1
2329
Male, age 80, right hemisphere
837.8
2561
Female, age 91, both hemispheres
704.7
Ventral periolivary nuclei nTPM: 981.2
2130
Female, age 85, both hemispheres
1234.9
2165
Male, age 80, both hemispheres
1132.7
2023
Male, age 76, both hemispheres
820.4
2794
Female, age 91, left hemisphere
737.0
Ventrolateral tegmental area, A5 NE cell group nTPM: 873.2
2449
Male, age 74, both hemispheres
1041.4
2840
Female, age 85, both hemispheres
996.1
1959
Male, age 76, both hemispheres
913.9
2359
Male, age 61, both hemispheres
871.1
2161
Male, age 80, both hemispheres
829.5
2456
Female, age 91, both hemispheres
587.2
PONS - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
539.2
Pig sample
Sample description
nTPM
Pons nTPM: 539.2
Samples: 4
Max nTPM: 665.1
Min nTPM: 440.2
Sample A
Female
665.1
Sample B
Female
440.2
Sample C
Male
524.4
Sample D
Male
527.1
PONS - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.