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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
1175.0
nTPM
HPA Brain:
251.1
nTPM
GTEx:
1175.0
nTPM
FANTOM5:
43.9
Scaled Tags Per Million
Pig:
474.3
nTPM
Mouse:
275.7
nTPM
Allen mouse:
0.1
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
251.1
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 198.6
1870
Female, age 42, unknown
236.1
2586
Male, age 75, left hemisphere
218.9
2219
Male, age 76, both hemispheres
212.1
2666
Male, age 74, left hemisphere
208.1
1827
Male, age 72, unknown
207.5
1830
Male, age 51, unknown
197.6
2828
Female, age 72, unknown
194.3
1833
Male, age 53, unknown
187.2
2019
Male, age 18, unknown
171.3
2411
Female, age 72, unknown
152.6
Dorsal raphe nucleus nTPM: 207.8
2298
Female, age 72, unknown
229.8
2750
Male, age 76, both hemispheres
218.2
1828
Male, age 53, unknown
200.1
2047
Male, age 72, unknown
196.3
2016
Female, age 72, unknown
194.7
Inferior colliculus nTPM: 212.9
1890
Male, age 53, unknown
229.9
2849
Male, age 72, unknown
225.6
1848
Female, age 42, unknown
201.2
2097
Female, age 72, unknown
194.9
Median raphe nucleus nTPM: 245.9
2220
Male, age 76, midline
245.9
Periaquaductal grey, anterior nTPM: 220.2
2502
Female, age 75, unknown
256.8
1795
Male, age 51, unknown
206.4
1947
Male, age 18, unknown
197.3
Periaquaductal grey, dorsal nTPM: 203.1
2850
Male, age 76, both hemispheres
259.7
1840
Male, age 53, unknown
223.0
1831
Male, age 72, unknown
175.6
2464
Female, age 72, unknown
154.2
Periaquaductal grey, lateral nTPM: 197.7
2140
Male, age 76, both hemispheres
215.3
2053
Male, age 18, unknown
193.0
2272
Male, age 74, both hemispheres
184.9
Pretectal area nTPM: 202.6
2224
Female, age 72, unknown
243.8
2825
Male, age 18, unknown
219.7
1944
Female, age 72, unknown
218.4
1816
Male, age 51, unknown
208.2
1817
Female, age 42, unknown
206.2
2007
Male, age 72, unknown
204.8
2316
Male, age 76, right hemisphere
198.1
1815
Male, age 53, unknown
195.9
2667
Female, age 75, unknown
181.6
2407
Male, age 75, both hemispheres
176.8
2273
Male, age 74, both hemispheres
174.4
Red nucleus nTPM: 214.2
2503
Female, age 72, unknown
258.9
1865
Male, age 51, unknown
247.7
1904
Male, age 53, unknown
226.7
1821
Female, age 72, unknown
222.7
2725
Female, age 75, unknown
220.1
2227
Male, age 72, unknown
217.3
2769
Male, age 72, unknown
211.1
2785
Male, age 18, unknown
209.9
1954
Female, age 42, unknown
195.0
2584
Male, age 75, left hemisphere
194.6
2588
Male, age 74, left hemisphere
189.4
2823
Male, age 76, right hemisphere
177.4
Substantia nigra nTPM: 251.1
2699
Male, age 18, unknown
322.7
2665
Male, age 74, both hemispheres
284.2
2409
Female, age 72, unknown
283.0
1851
Male, age 51, unknown
275.2
1916
Female, age 42, unknown
268.9
2241
Male, age 72, unknown
253.6
1889
Female, age 72, unknown
237.5
1941
Male, age 53, unknown
216.8
2590
Female, age 75, unknown
210.1
2583
Male, age 75, right hemisphere
158.7
Superior colliculus nTPM: 216.9
2587
Male, age 74, left hemisphere
265.1
1913
Female, age 42, unknown
251.3
1796
Male, age 53, unknown
246.3
2668
Female, age 75, unknown
231.2
1995
Male, age 72, unknown
218.3
2261
Male, age 18, unknown
199.8
1839
Male, age 51, unknown
191.5
1895
Male, age 76, right hemisphere
189.7
2087
Female, age 72, unknown
189.1
2664
Male, age 75, both hemispheres
187.1
Ventral tegmental area nTPM: 236.3
2223
Female, age 72, unknown
304.0
1915
Female, age 42, unknown
277.7
2218
Male, age 76, both hemispheres
237.3
1942
Male, age 51, unknown
206.5
2021
Male, age 53, unknown
201.5
2410
Female, age 72, unknown
190.8
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
1175.0
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 1175.0
Samples: 139
Max nTPM: 3580.7
Min nTPM: 518.7
Std nTPM: 434.4
Median nTPM: 1114.5
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
3580.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
2653.9
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
2470.4
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
2378.5
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
2321.7
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
2154.7
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
1955.6
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
1932.1
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
1890.5
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
1812.8
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
1809.5
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
1728.2
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
1666.7
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
1660.0
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
1658.1
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
1654.0
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
1645.1
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
1638.6
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
1588.2
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
1536.3
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
1506.8
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
1476.6
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
1455.3
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
1439.0
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
1420.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
1417.1
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
1406.5
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
1404.2
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
1392.0
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
1371.2
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
1367.6
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
1366.3
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
1364.5
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
1344.6
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
1317.9
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
1317.3
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
1310.3
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
1301.4
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
1300.1
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
1293.9
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
1282.1
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
1265.9
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
1253.0
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
1245.2
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
1235.8
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
1235.3
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
1226.9
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
1225.3
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
1218.2
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
1209.1
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
1200.1
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
1192.7
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
1191.9
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
1189.0
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
1188.3
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
1179.0
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
1177.7
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
1174.6
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
1160.9
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
1152.5
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
1144.9
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
1139.5
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
1130.5
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
1126.6
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
1121.9
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
1119.0
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
1118.8
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
1118.4
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
1114.6
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
1114.5
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
1104.1
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
1091.8
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
1091.7
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
1080.0
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
1079.8
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
1072.9
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
1065.2
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
1059.7
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
1045.7
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
1031.4
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
1030.0
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
1029.6
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
1013.4
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
1004.0
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
995.4
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
988.8
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
987.2
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
972.2
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
968.4
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
968.2
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
955.9
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
952.4
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
943.4
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
942.7
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
939.6
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
936.1
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
924.4
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
921.1
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
913.9
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
913.2
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
907.0
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
898.2
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
896.9
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
888.1
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
885.2
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
882.3
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
882.1
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
877.3
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
871.3
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
865.3
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
860.3
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
857.1
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
846.7
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
846.1
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
833.5
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
826.0
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
822.8
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
818.3
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
817.5
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
812.4
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
811.1
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
796.1
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
786.7
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
775.8
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
772.5
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
765.3
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
751.0
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
744.7
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
743.7
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
729.6
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
723.0
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
680.5
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
649.9
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
638.0
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
637.0
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
627.1
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
606.9
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
584.2
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
518.7
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
275.7
Mouse sample
Sample description
nTPM
Midbrain nTPM: 275.7
Samples: 4
Max nTPM: 306.1
Min nTPM: 228.5
Sample A
Male
306.1
Sample B
Male
274.9
Sample C
Female
228.5
Sample D
Female
293.3
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.