MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:17.3 nTPM
HPA Brain:22.3 nTPM
GTEx:17.3 nTPM
FANTOM5:34.6 Scaled Tags Per Million
Pig:46.2 nTPM
Mouse:43.9 nTPM
Allen mouse:0.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 22.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 17.6
2019 Male, age 18, unknown 22.7
1827 Male, age 72, unknown 21.1
2586 Male, age 75, left hemisphere 20.5
2828 Female, age 72, unknown 19.7
2219 Male, age 76, both hemispheres 16.7
1870 Female, age 42, unknown 16.4
2411 Female, age 72, unknown 15.8
1830 Male, age 51, unknown 14.7
1833 Male, age 53, unknown 14.5
2666 Male, age 74, left hemisphere 14.2
Dorsal raphe nucleus
nTPM: 17.1
2298 Female, age 72, unknown 19.0
2047 Male, age 72, unknown 18.5
2750 Male, age 76, both hemispheres 16.9
1828 Male, age 53, unknown 16.7
2016 Female, age 72, unknown 14.1
Inferior colliculus
nTPM: 16.2
2849 Male, age 72, unknown 18.2
2097 Female, age 72, unknown 16.3
1848 Female, age 42, unknown 15.3
1890 Male, age 53, unknown 14.8
Median raphe nucleus
nTPM: 20.4
2220 Male, age 76, midline 20.4
Periaquaductal grey, anterior
nTPM: 17.7
1795 Male, age 51, unknown 20.4
1947 Male, age 18, unknown 18.0
2502 Female, age 75, unknown 14.6
Periaquaductal grey, dorsal
nTPM: 15.1
2850 Male, age 76, both hemispheres 17.8
1840 Male, age 53, unknown 15.9
1831 Male, age 72, unknown 14.9
2464 Female, age 72, unknown 11.9
Periaquaductal grey, lateral
nTPM: 16.5
2272 Male, age 74, both hemispheres 17.3
2140 Male, age 76, both hemispheres 16.4
2053 Male, age 18, unknown 15.8
Pretectal area
nTPM: 22.3
1944 Female, age 72, unknown 31.9
2007 Male, age 72, unknown 31.4
1817 Female, age 42, unknown 31.1
1816 Male, age 51, unknown 28.6
1815 Male, age 53, unknown 23.0
2667 Female, age 75, unknown 21.6
2224 Female, age 72, unknown 18.5
2273 Male, age 74, both hemispheres 16.5
2825 Male, age 18, unknown 15.5
2316 Male, age 76, right hemisphere 14.1
2407 Male, age 75, both hemispheres 13.1
Red nucleus
nTPM: 16.1
2785 Male, age 18, unknown 23.0
2584 Male, age 75, left hemisphere 19.8
2725 Female, age 75, unknown 17.9
1821 Female, age 72, unknown 16.7
2588 Male, age 74, left hemisphere 16.5
1954 Female, age 42, unknown 16.0
2823 Male, age 76, right hemisphere 15.6
1865 Male, age 51, unknown 14.6
2503 Female, age 72, unknown 13.8
2769 Male, age 72, unknown 13.6
2227 Male, age 72, unknown 13.2
1904 Male, age 53, unknown 12.9
Substantia nigra
nTPM: 17.9
1889 Female, age 72, unknown 26.3
1916 Female, age 42, unknown 24.1
2665 Male, age 74, both hemispheres 22.5
1941 Male, age 53, unknown 21.6
1851 Male, age 51, unknown 18.1
2590 Female, age 75, unknown 16.8
2583 Male, age 75, right hemisphere 15.1
2241 Male, age 72, unknown 13.6
2699 Male, age 18, unknown 12.1
2409 Female, age 72, unknown 9.4
Superior colliculus
nTPM: 18.1
2087 Female, age 72, unknown 24.0
1796 Male, age 53, unknown 22.4
2668 Female, age 75, unknown 19.2
2261 Male, age 18, unknown 18.6
2587 Male, age 74, left hemisphere 18.1
1895 Male, age 76, right hemisphere 17.7
1913 Female, age 42, unknown 16.1
1839 Male, age 51, unknown 15.8
2664 Male, age 75, both hemispheres 14.8
1995 Male, age 72, unknown 14.3
Ventral tegmental area
nTPM: 16.4
2410 Female, age 72, unknown 19.8
2218 Male, age 76, both hemispheres 19.7
1915 Female, age 42, unknown 17.0
2021 Male, age 53, unknown 14.5
1942 Male, age 51, unknown 14.3
2223 Female, age 72, unknown 13.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 17.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 17.3
Samples: 139

Max nTPM: 38.3
Min nTPM: 7.7
Std nTPM: 5.4
Median nTPM: 16.2
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 38.3
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 33.7
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 29.9
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 28.7
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 28.1
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 26.9
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 26.7
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 26.5
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 26.4
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 26.2
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 25.3
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 34.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 34.6
FF:10158-103A5 76 years, female 34.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 46.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 43.9
Samples: 4

Max nTPM: 49.1
Min nTPM: 36.8
Sample A Female 44.5
Sample B Female 36.8
Sample C Male 45.3
Sample D Male 49.1
Midbrain
nTPM: 46.2
Samples: 4

Max nTPM: 60.9
Min nTPM: 38.6
Sample A Female 60.9
Sample B Female 39.5
Sample C Male 45.6
Sample D Male 38.6
Periaqueductal gray
nTPM: 40.3
Samples: 3

Max nTPM: 43.5
Min nTPM: 36.1
Sample B Female 36.1
Sample C Male 43.5
Sample D Male 41.2
Superior colliculi
nTPM: 46.2
Samples: 4

Max nTPM: 49.4
Min nTPM: 38.4
Sample A Female 48.4
Sample B Female 38.4
Sample C Male 49.4
Sample D Male 48.4

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 43.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 43.9
Samples: 4

Max nTPM: 45.8
Min nTPM: 42.9
Sample A Male 43.8
Sample B Male 43.2
Sample C Female 42.9
Sample D Female 45.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.5
68269035 Antisense, RP_041208_01_E10, Mouse strain C57BL/6J (56 days, male) 0.5

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org