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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
8.5
nTPM
HPA Brain:
21.3
nTPM
GTEx:
8.5
nTPM
FANTOM5:
12.5
Scaled Tags Per Million
Pig:
6.6
nTPM
Mouse:
0.4
nTPM
MIDBRAIN - Annotated protein expression
Pending normal tissue analysis
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
21.3
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 16.2
2586
Male, age 75, left hemisphere
26.0
2219
Male, age 76, both hemispheres
18.4
2828
Female, age 72, unknown
17.0
1830
Male, age 51, unknown
15.7
1833
Male, age 53, unknown
15.6
2019
Male, age 18, unknown
15.2
1827
Male, age 72, unknown
14.5
1870
Female, age 42, unknown
14.1
2411
Female, age 72, unknown
13.9
2666
Male, age 74, left hemisphere
11.7
Dorsal raphe nucleus nTPM: 17.8
2016
Female, age 72, unknown
19.7
2298
Female, age 72, unknown
19.3
2047
Male, age 72, unknown
17.6
2750
Male, age 76, both hemispheres
17.1
1828
Male, age 53, unknown
15.6
Inferior colliculus nTPM: 16.8
2097
Female, age 72, unknown
17.9
2849
Male, age 72, unknown
17.4
1848
Female, age 42, unknown
16.7
1890
Male, age 53, unknown
15.3
Median raphe nucleus nTPM: 13.7
2220
Male, age 76, midline
13.7
Periaquaductal grey, anterior nTPM: 21.3
2502
Female, age 75, unknown
26.3
1795
Male, age 51, unknown
22.0
1947
Male, age 18, unknown
15.7
Periaquaductal grey, dorsal nTPM: 16.3
1840
Male, age 53, unknown
19.7
2464
Female, age 72, unknown
17.3
1831
Male, age 72, unknown
15.6
2850
Male, age 76, both hemispheres
12.5
Periaquaductal grey, lateral nTPM: 19.6
2272
Male, age 74, both hemispheres
27.9
2053
Male, age 18, unknown
17.1
2140
Male, age 76, both hemispheres
13.8
Pretectal area nTPM: 16.1
2273
Male, age 74, both hemispheres
24.2
2224
Female, age 72, unknown
21.0
2825
Male, age 18, unknown
17.8
2407
Male, age 75, both hemispheres
16.5
2007
Male, age 72, unknown
15.2
2316
Male, age 76, right hemisphere
14.8
1817
Female, age 42, unknown
14.0
2667
Female, age 75, unknown
13.8
1816
Male, age 51, unknown
13.6
1944
Female, age 72, unknown
13.5
1815
Male, age 53, unknown
13.0
Red nucleus nTPM: 16.4
2785
Male, age 18, unknown
19.0
2584
Male, age 75, left hemisphere
18.4
2227
Male, age 72, unknown
18.3
1904
Male, age 53, unknown
18.2
2503
Female, age 72, unknown
18.1
2769
Male, age 72, unknown
18.0
2725
Female, age 75, unknown
16.6
2588
Male, age 74, left hemisphere
16.2
2823
Male, age 76, right hemisphere
16.1
1865
Male, age 51, unknown
13.9
1954
Female, age 42, unknown
13.5
1821
Female, age 72, unknown
11.1
Substantia nigra nTPM: 13.9
2583
Male, age 75, right hemisphere
19.3
1916
Female, age 42, unknown
16.0
2699
Male, age 18, unknown
15.1
1851
Male, age 51, unknown
14.9
2665
Male, age 74, both hemispheres
14.7
1941
Male, age 53, unknown
12.9
2590
Female, age 75, unknown
12.4
1889
Female, age 72, unknown
12.2
2241
Male, age 72, unknown
12.0
2409
Female, age 72, unknown
9.7
Superior colliculus nTPM: 16.7
2664
Male, age 75, both hemispheres
26.1
1796
Male, age 53, unknown
18.9
1995
Male, age 72, unknown
17.2
2261
Male, age 18, unknown
17.1
1839
Male, age 51, unknown
16.4
1913
Female, age 42, unknown
16.3
2668
Female, age 75, unknown
15.9
2587
Male, age 74, left hemisphere
15.3
1895
Male, age 76, right hemisphere
12.0
2087
Female, age 72, unknown
11.4
Ventral tegmental area nTPM: 17.1
1942
Male, age 51, unknown
20.2
2223
Female, age 72, unknown
20.1
2021
Male, age 53, unknown
17.6
2218
Male, age 76, both hemispheres
15.6
1915
Female, age 42, unknown
15.4
2410
Female, age 72, unknown
13.6
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
8.5
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 8.5
Samples: 139
Max nTPM: 23.9
Min nTPM: 1.7
Std nTPM: 3.8
Median nTPM: 7.9
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
23.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
23.7
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
17.1
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
16.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
16.1
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
15.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
15.2
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
14.9
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
14.8
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
14.7
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
14.3
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
13.9
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
13.5
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
13.4
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
13.4
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
13.0
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
13.0
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
12.9
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
12.2
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
12.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
12.2
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
11.7
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
11.7
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
11.7
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
11.5
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
11.5
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
11.4
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
11.4
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
11.4
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
11.3
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
11.3
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
11.2
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
11.2
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
11.2
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
11.1
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
11.0
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
10.9
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
10.6
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
10.5
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
10.4
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
10.3
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
10.2
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
10.1
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
10.0
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
9.9
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
9.9
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
9.9
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
9.5
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
9.5
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
9.4
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
9.3
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
9.3
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
9.2
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
9.2
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
9.1
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
9.1
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
9.0
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
8.9
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
8.8
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
8.7
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
8.6
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
8.5
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
8.5
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
8.3
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
8.3
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
8.3
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
8.0
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
7.9
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
7.9
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
7.9
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
7.8
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
7.8
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
7.6
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
7.6
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
7.5
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
7.5
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
7.4
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
7.3
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
7.3
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
7.2
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
7.2
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
7.2
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
7.1
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
7.1
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
7.0
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
7.0
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
6.9
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
6.8
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
6.7
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
6.7
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
6.6
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
6.5
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
6.4
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
6.4
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
6.3
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
6.2
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
6.2
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
6.1
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
6.0
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
5.9
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
5.9
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
5.9
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
5.9
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
5.8
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
5.8
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
5.7
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
5.7
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
5.5
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
5.5
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
5.4
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
5.3
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
4.9
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
4.9
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
4.9
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
4.9
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
4.8
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
4.7
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
4.7
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
4.6
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
4.5
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
4.5
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
4.5
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
4.4
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
4.4
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
4.4
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
4.3
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
4.3
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
4.3
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
4.1
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
4.0
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
3.7
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
3.7
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
3.4
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
2.9
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
2.8
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
2.7
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
2.6
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
2.4
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
1.7
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.