MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:127.0 nTPM
HPA Brain:81.7 nTPM
GTEx:127.0 nTPM
FANTOM5:305.6 Scaled Tags Per Million
Pig:49.5 nTPM
Mouse:76.1 nTPM
Allen mouse:0.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 81.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 65.5
1870 Female, age 42, unknown 81.5
2019 Male, age 18, unknown 77.6
1833 Male, age 53, unknown 71.2
2411 Female, age 72, unknown 70.3
1830 Male, age 51, unknown 67.9
1827 Male, age 72, unknown 60.6
2828 Female, age 72, unknown 58.1
2219 Male, age 76, both hemispheres 57.9
2586 Male, age 75, left hemisphere 56.5
2666 Male, age 74, left hemisphere 53.5
Dorsal raphe nucleus
nTPM: 74.2
2016 Female, age 72, unknown 80.6
2298 Female, age 72, unknown 78.0
2750 Male, age 76, both hemispheres 73.1
1828 Male, age 53, unknown 71.3
2047 Male, age 72, unknown 68.0
Inferior colliculus
nTPM: 74.3
2097 Female, age 72, unknown 79.2
1848 Female, age 42, unknown 76.2
1890 Male, age 53, unknown 73.2
2849 Male, age 72, unknown 68.6
Median raphe nucleus
nTPM: 72.6
2220 Male, age 76, midline 72.6
Periaquaductal grey, anterior
nTPM: 68.9
2502 Female, age 75, unknown 78.8
1947 Male, age 18, unknown 69.2
1795 Male, age 51, unknown 58.7
Periaquaductal grey, dorsal
nTPM: 71.0
2850 Male, age 76, both hemispheres 73.9
1840 Male, age 53, unknown 71.9
1831 Male, age 72, unknown 69.1
2464 Female, age 72, unknown 68.9
Periaquaductal grey, lateral
nTPM: 63.9
2272 Male, age 74, both hemispheres 68.1
2140 Male, age 76, both hemispheres 63.3
2053 Male, age 18, unknown 60.3
Pretectal area
nTPM: 72.3
2224 Female, age 72, unknown 85.1
1944 Female, age 72, unknown 82.4
1817 Female, age 42, unknown 79.0
2667 Female, age 75, unknown 76.2
2007 Male, age 72, unknown 74.8
1815 Male, age 53, unknown 74.2
2273 Male, age 74, both hemispheres 73.0
1816 Male, age 51, unknown 70.9
2316 Male, age 76, right hemisphere 61.1
2407 Male, age 75, both hemispheres 59.7
2825 Male, age 18, unknown 59.1
Red nucleus
nTPM: 68.1
1821 Female, age 72, unknown 85.0
2503 Female, age 72, unknown 75.8
2785 Male, age 18, unknown 75.6
1865 Male, age 51, unknown 71.5
1954 Female, age 42, unknown 71.4
1904 Male, age 53, unknown 69.5
2227 Male, age 72, unknown 67.6
2823 Male, age 76, right hemisphere 66.6
2769 Male, age 72, unknown 65.3
2725 Female, age 75, unknown 61.1
2584 Male, age 75, left hemisphere 55.6
2588 Male, age 74, left hemisphere 51.7
Substantia nigra
nTPM: 81.7
2241 Male, age 72, unknown 110.7
1941 Male, age 53, unknown 88.8
1916 Female, age 42, unknown 87.5
2409 Female, age 72, unknown 86.2
2699 Male, age 18, unknown 86.2
1889 Female, age 72, unknown 85.2
1851 Male, age 51, unknown 84.0
2665 Male, age 74, both hemispheres 65.2
2590 Female, age 75, unknown 63.5
2583 Male, age 75, right hemisphere 59.2
Superior colliculus
nTPM: 69.6
2587 Male, age 74, left hemisphere 81.7
2668 Female, age 75, unknown 79.1
1839 Male, age 51, unknown 73.6
1913 Female, age 42, unknown 70.0
2087 Female, age 72, unknown 69.2
2664 Male, age 75, both hemispheres 68.0
1895 Male, age 76, right hemisphere 67.4
1995 Male, age 72, unknown 64.4
2261 Male, age 18, unknown 61.2
1796 Male, age 53, unknown 60.8
Ventral tegmental area
nTPM: 78.7
2410 Female, age 72, unknown 83.2
2223 Female, age 72, unknown 81.9
2218 Male, age 76, both hemispheres 81.2
1915 Female, age 42, unknown 78.3
1942 Male, age 51, unknown 75.4
2021 Male, age 53, unknown 72.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 127.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 127.0
Samples: 183

Max nTPM: 214.0
Min nTPM: 58.4
Std nTPM: 27.1
Median nTPM: 125.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 214.0
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 199.0
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 192.2
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 189.4
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 187.7
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 183.2
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 181.3
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 178.1
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 177.4
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 175.1
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 174.8
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 305.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 305.6
FF:10158-103A5 76 years, female 305.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 49.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 48.0
Samples: 4

Max nTPM: 54.2
Min nTPM: 34.4
Sample A Female 54.2
Sample B Female 52.8
Sample C Male 50.4
Sample D Male 34.4
Midbrain
nTPM: 46.3
Samples: 4

Max nTPM: 59.6
Min nTPM: 30.1
Sample A Female 59.6
Sample B Female 48.5
Sample C Male 47.0
Sample D Male 30.1
Periaqueductal gray
nTPM: 49.5
Samples: 3

Max nTPM: 53.5
Min nTPM: 44.5
Sample B Female 44.5
Sample C Male 53.5
Sample D Male 50.5
Superior colliculi
nTPM: 38.4
Samples: 4

Max nTPM: 42.5
Min nTPM: 35.8
Sample A Female 37.0
Sample B Female 42.5
Sample C Male 38.2
Sample D Male 35.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 76.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 76.1
Samples: 4

Max nTPM: 78.8
Min nTPM: 73.5
Sample A Male 78.8
Sample B Male 77.0
Sample C Female 73.5
Sample D Female 75.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
70439141 Antisense, RP_050614_03_C06, Mouse strain C57BL/6J (56 days, male) 0.1

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo