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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:193.7 nTPM
HPA Brain:142.2 nTPM
GTEx:193.7 nTPM
FANTOM5:64.4 Scaled Tags Per Million
Pig:58.7 nTPM
Mouse:137.5 nTPM
Allen mouse:5.7 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

142.2
Sample id Sample description nTPM
Amygdala
nTPM: 124.1
2814 Male, age 76, right hemisphere 139.1
2517 Female, age 94, left hemisphere 137.8
2514 Male, age 75, right hemisphere 114.9
1987 Female, age 91, left hemisphere 114.6
2695 Female, age 67, right hemisphere 114.3
Basal amygdala
nTPM: 137.1
2685 Female, age 94, left hemisphere 152.3
2827 Female, age 67, right hemisphere 150.7
2243 Female, age 91, right hemisphere 142.6
2609 Male, age 75, right hemisphere 131.5
2110 Male, age 80, left hemisphere 128.8
1955 Male, age 76, both hemispheres 116.7
Central amygdala
nTPM: 139.9
2826 Female, age 94, left hemisphere 196.5
2239 Male, age 80, left hemisphere 134.7
2515 Male, age 75, right hemisphere 126.6
1905 Male, age 76, both hemispheres 124.9
2701 Female, age 91, right hemisphere 117.1
Corticomedial amygdala
nTPM: 134.4
2829 Male, age 80, left hemisphere 149.3
2429 Female, age 94, left hemisphere 148.3
2535 Female, age 67, right hemisphere 146.2
2242 Female, age 91, right hemisphere 126.4
2428 Male, age 75, right hemisphere 123.8
2240 Male, age 76, both hemispheres 112.1
Lateral amygdala
nTPM: 142.2
2534 Female, age 94, left hemisphere 185.6
2516 Male, age 75, right hemisphere 140.4
2830 Female, age 67, right hemisphere 140.1
2256 Male, age 80, left hemisphere 131.2
1883 Male, age 76, both hemispheres 128.9
2255 Female, age 91, right hemisphere 127.0

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

193.7
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 193.7
Samples: 181

Max nTPM: 607.5
Min nTPM: 99.0
Std nTPM: 61.9
Median nTPM: 179.5
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 607.5
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 421.1
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 350.5
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 328.1
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 321.5
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 318.2
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 317.1
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 310.6
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 306.7
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 297.1
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 293.3
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 283.0
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 279.6
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 276.2
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 270.7
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 270.4
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 267.8
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 266.3
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 266.3
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 260.0
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 259.9
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 259.2
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 258.0
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 255.8
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 253.8
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 250.9
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 250.0
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 246.7
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 243.7
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 241.8
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 241.5
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 239.6
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 239.4
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 237.8
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 236.4
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 236.2
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 234.8
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 232.9
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 232.5
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 232.4
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 231.5
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 230.3
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 227.2
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 225.1
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 224.6
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 223.9
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 222.9
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 222.7
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 219.9
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 218.7
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 218.5
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 217.6
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 216.7
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 216.5
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 215.5
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 215.1
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 214.6
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 214.0
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 214.0
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 213.7
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 213.4
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 210.1
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 205.2
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 205.1
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 204.4
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 201.7
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 200.6
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 199.0
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 197.7
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 197.5
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 196.9
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 196.4
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 196.3
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 196.1
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 194.3
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 193.4
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 192.8
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 192.5
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 191.1
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 190.7
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 190.3
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 188.8
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 188.3
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 188.1
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 187.7
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 186.1
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 185.4
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 183.4
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 182.7
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 181.1
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 179.5
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 179.2
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 178.9
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 177.8
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 177.4
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 176.5
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 175.1
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 174.7
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 173.7
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 172.8
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 172.3
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 172.0
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 171.3
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 171.2
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 170.8
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 169.8
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 169.4
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 169.1
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 169.0
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 168.9
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 168.0
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 167.6
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 167.5
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 166.9
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 166.8
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 166.3
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 166.2
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 165.9
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 162.7
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 161.9
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 160.4
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 159.8
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 159.5
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 159.4
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 158.9
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 157.2
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 157.0
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 156.8
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 155.1
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 154.3
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 153.4
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 152.6
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 152.6
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 152.5
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 149.1
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 149.0
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 148.9
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 148.6
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 148.5
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 148.1
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 147.9
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 146.1
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 146.0
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 144.7
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 144.3
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 143.2
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 142.8
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 142.8
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 142.2
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 142.0
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 141.8
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 140.6
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 140.0
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 139.5
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 138.7
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 137.5
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 137.3
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 135.7
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 135.1
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 134.4
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 133.8
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 133.2
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 133.1
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 132.6
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 132.4
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 130.9
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 129.5
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 129.3
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 129.1
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 129.0
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 127.9
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 127.9
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 126.6
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 120.9
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 118.4
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 117.7
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 112.1
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 110.4
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 106.2
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 104.1
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 99.0
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

64.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 64.4
FF:10151-102I7 76 years, female 64.4

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

58.7
Pig sample Sample description nTPM
Amygdala
nTPM: 58.7
Samples: 4

Max nTPM: 81.0
Min nTPM: 46.2
Sample A Female 81.0
Sample B Female 54.4
Sample C Male 53.0
Sample D Male 46.2

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

137.5
Mouse sample Sample description nTPM
Amygdala
nTPM: 137.5
Samples: 4

Max nTPM: 146.1
Min nTPM: 118.2
Sample A Male 146.0
Sample B Male 139.6
Sample C Female 146.1
Sample D Female 118.2

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

5.7
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 5.7
69028246 Antisense, RP_050315_01_G07, Mouse strain C57BL/6J (56 days, male) 5.7

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