MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:6.0 nTPM
HPA Brain:22.0 nTPM
GTEx:6.0 nTPM
FANTOM5:18.5 Scaled Tags Per Million
Pig:6.7 nTPM
Mouse:0.7 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 22.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 20.9
2586 Male, age 75, left hemisphere 29.2
2828 Female, age 72, unknown 26.1
2019 Male, age 18, unknown 24.3
2666 Male, age 74, left hemisphere 22.9
2219 Male, age 76, both hemispheres 21.9
1827 Male, age 72, unknown 19.4
2411 Female, age 72, unknown 17.4
1833 Male, age 53, unknown 16.6
1830 Male, age 51, unknown 15.5
1870 Female, age 42, unknown 15.5
Dorsal raphe nucleus
nTPM: 19.4
2047 Male, age 72, unknown 22.8
2750 Male, age 76, both hemispheres 19.6
1828 Male, age 53, unknown 19.1
2298 Female, age 72, unknown 17.9
2016 Female, age 72, unknown 17.7
Inferior colliculus
nTPM: 18.6
1890 Male, age 53, unknown 23.2
2097 Female, age 72, unknown 19.0
2849 Male, age 72, unknown 16.9
1848 Female, age 42, unknown 15.4
Median raphe nucleus
nTPM: 19.5
2220 Male, age 76, midline 19.5
Periaquaductal grey, anterior
nTPM: 20.6
1795 Male, age 51, unknown 26.8
2502 Female, age 75, unknown 19.7
1947 Male, age 18, unknown 15.2
Periaquaductal grey, dorsal
nTPM: 20.0
1831 Male, age 72, unknown 24.1
2464 Female, age 72, unknown 20.6
1840 Male, age 53, unknown 17.8
2850 Male, age 76, both hemispheres 17.4
Periaquaductal grey, lateral
nTPM: 21.1
2140 Male, age 76, both hemispheres 23.2
2272 Male, age 74, both hemispheres 20.2
2053 Male, age 18, unknown 20.0
Pretectal area
nTPM: 22.0
1944 Female, age 72, unknown 30.8
1816 Male, age 51, unknown 29.7
2007 Male, age 72, unknown 27.4
2316 Male, age 76, right hemisphere 23.9
1815 Male, age 53, unknown 22.7
1817 Female, age 42, unknown 22.5
2224 Female, age 72, unknown 18.4
2667 Female, age 75, unknown 18.4
2407 Male, age 75, both hemispheres 16.3
2825 Male, age 18, unknown 16.3
2273 Male, age 74, both hemispheres 15.5
Red nucleus
nTPM: 21.8
2588 Male, age 74, left hemisphere 35.2
2823 Male, age 76, right hemisphere 27.9
2785 Male, age 18, unknown 25.9
2584 Male, age 75, left hemisphere 22.8
2725 Female, age 75, unknown 20.7
2769 Male, age 72, unknown 20.6
1904 Male, age 53, unknown 20.0
2227 Male, age 72, unknown 19.8
2503 Female, age 72, unknown 18.7
1865 Male, age 51, unknown 17.9
1954 Female, age 42, unknown 17.7
1821 Female, age 72, unknown 14.5
Substantia nigra
nTPM: 18.6
2665 Male, age 74, both hemispheres 30.6
1889 Female, age 72, unknown 19.5
2583 Male, age 75, right hemisphere 19.3
1916 Female, age 42, unknown 18.4
2590 Female, age 75, unknown 18.3
1851 Male, age 51, unknown 18.0
2699 Male, age 18, unknown 17.0
1941 Male, age 53, unknown 16.3
2409 Female, age 72, unknown 14.6
2241 Male, age 72, unknown 14.1
Superior colliculus
nTPM: 21.1
2087 Female, age 72, unknown 33.0
2261 Male, age 18, unknown 27.6
2668 Female, age 75, unknown 24.8
1796 Male, age 53, unknown 21.7
2664 Male, age 75, both hemispheres 18.6
1995 Male, age 72, unknown 18.2
2587 Male, age 74, left hemisphere 18.0
1913 Female, age 42, unknown 17.4
1839 Male, age 51, unknown 15.8
1895 Male, age 76, right hemisphere 15.5
Ventral tegmental area
nTPM: 19.3
2021 Male, age 53, unknown 22.3
1942 Male, age 51, unknown 21.1
2218 Male, age 76, both hemispheres 20.1
2410 Female, age 72, unknown 19.3
1915 Female, age 42, unknown 17.0
2223 Female, age 72, unknown 16.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 6.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 6.0
Samples: 139

Max nTPM: 31.3
Min nTPM: 0.6
Std nTPM: 4.0
Median nTPM: 5.1
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 31.3
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 19.4
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 19.2
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 19.1
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 17.3
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 16.0
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 12.9
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 11.3
GTEX-13X6I-0011-R2b-SM-5PNWQ 60-69 years, male 11.1
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 11.0
GTEX-1A3MX-0011-R2b-SM-7EWFL 60-69 years, male 10.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 18.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 18.5
FF:10158-103A5 76 years, female 18.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 6.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 4.5
Samples: 4

Max nTPM: 7.5
Min nTPM: 2.8
Sample A Female 2.8
Sample B Female 7.5
Sample C Male 3.6
Sample D Male 3.9
Midbrain
nTPM: 3.9
Samples: 4

Max nTPM: 7.3
Min nTPM: 2.7
Sample A Female 2.8
Sample B Female 2.8
Sample C Male 7.3
Sample D Male 2.7
Periaqueductal gray
nTPM: 2.3
Samples: 3

Max nTPM: 2.5
Min nTPM: 2.2
Sample B Female 2.2
Sample C Male 2.5
Sample D Male 2.3
Superior colliculi
nTPM: 6.7
Samples: 4

Max nTPM: 14.8
Min nTPM: 3.9
Sample A Female 3.9
Sample B Female 14.8
Sample C Male 4.3
Sample D Male 3.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 0.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 0.7
Samples: 4

Max nTPM: 0.8
Min nTPM: 0.6
Sample A Male 0.8
Sample B Male 0.8
Sample C Female 0.7
Sample D Female 0.6

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
69736004 Antisense, RP_050503_04_A04, Mouse strain C57BL/6J (56 days, male) 0.2

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