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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
171.8
nTPM
Monaco:
149.7
nTPM
Schmiedel:
136.5
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
171.8
HPA sample
nTPM
gdT-cell nTPM: 171.8
Samples: 6
Max nTPM: 208.3
Min nTPM: 120.4
P10809_1007
160.6
P10809_1022
208.3
P10809_1041
177.8
P10809_1060
120.4
P10809_1077
174.3
P10809_1098
189.5
MAIT T-cell nTPM: 163.3
Samples: 6
Max nTPM: 195.2
Min nTPM: 141.8
P10809_1006
141.8
P10809_1024
190.6
P10809_1043
153.1
P10809_1062
155.6
P10809_1083
143.6
P10809_1097
195.2
Memory CD4 T-cell nTPM: 143.6
Samples: 6
Max nTPM: 162.9
Min nTPM: 129.4
P10809_1014
134.3
P10809_1026
162.9
P10809_1045
138.0
P10809_1064
129.4
P10809_1086
144.0
P10809_1113
153.0
Memory CD8 T-cell nTPM: 160.0
Samples: 5
Max nTPM: 173.1
Min nTPM: 144.3
P10809_1012
144.3
P10809_1027
161.5
P10809_1046
169.3
P10809_1065
152.0
P10809_1111
173.1
Naive CD4 T-cell nTPM: 115.1
Samples: 6
Max nTPM: 123.3
Min nTPM: 103.2
P10809_1015
106.7
P10809_1030
123.3
P10809_1049
122.0
P10809_1068
103.2
P10809_1085
113.2
P10809_1112
122.3
Naive CD8 T-cell nTPM: 132.9
Samples: 6
Max nTPM: 154.9
Min nTPM: 114.8
P10809_1016
152.2
P10809_1031
114.8
P10809_1050
126.0
P10809_1069
131.3
P10809_1087
154.9
P10809_1110
118.4
T-reg nTPM: 143.7
Samples: 6
Max nTPM: 198.4
Min nTPM: 115.8
P10809_1018
142.1
P10809_1037
118.3
P10809_1056
148.8
P10809_1075
115.8
P10809_1094
198.4
P10809_1106
139.0
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
149.7
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 82.9
Samples: 4
Max nTPM: 124.3
Min nTPM: 49.7
RHH5202_R3573
124.3
RHH5230_R3602
51.5
RHH5259_R3631
49.7
RHH5288_R3660
106.1
Effector memory CD8 T-cell nTPM: 88.3
Samples: 4
Max nTPM: 131.4
Min nTPM: 66.3
RHH5203_R3574
131.4
RHH5231_R3603
82.0
RHH5260_R3632
66.3
RHH5289_R3661
73.4
MAIT T-cell nTPM: 100.9
Samples: 4
Max nTPM: 171.1
Min nTPM: 77.0
RHH5233_R3605
77.0
RHH5205_R3576
77.2
RHH5262_R3634
78.3
RHH5297_R3663
171.1
Memory CD4 T-cell TFH nTPM: 93.2
Samples: 4
Max nTPM: 105.5
Min nTPM: 70.3
RHH5300_R3666
91.9
RHH5236_R3608
105.5
RHH5265_R3637
70.3
RHH5208_R3579
105.2
Memory CD4 T-cell Th1 nTPM: 94.5
Samples: 4
Max nTPM: 155.2
Min nTPM: 55.9
RHH5210_R3581
92.9
RHH5302_R3668
155.2
RHH5238_R3610
73.8
RHH5267_R3639
55.9
Memory CD4 T-cell Th1/Th17 nTPM: 95.0
Samples: 4
Max nTPM: 149.9
Min nTPM: 47.3
RHH5303_R3669
149.9
RHH5211_R3582
121.2
RHH5239_R3611
47.3
RHH5268_R3640
61.5
Memory CD4 T-cell Th17 nTPM: 63.1
Samples: 4
Max nTPM: 116.6
Min nTPM: 36.3
RHH5304_R3670
57.9
RHH5212_R3583
116.6
RHH5240_R3612
41.7
RHH5269_R3641
36.3
Memory CD4 T-cell Th2 nTPM: 81.4
Samples: 4
Max nTPM: 106.3
Min nTPM: 52.1
RHH5305_R3671
74.2
RHH5213_R3584
106.3
RHH5241_R3613
93.1
RHH5270_R3642
52.1
Naive CD4 T-cell nTPM: 59.5
Samples: 4
Max nTPM: 94.7
Min nTPM: 35.1
RHH5306_R3672
56.2
RHH5214_R3585
94.7
RHH5242_R3614
51.8
RHH5271_R3643
35.1
Naive CD8 T-cell nTPM: 70.8
Samples: 4
Max nTPM: 92.2
Min nTPM: 50.1
RHH5201_R3572
92.2
RHH5229_R3601
54.1
RHH5258_R3630
86.9
RHH5287_R3659
50.1
Non-Vd2 gdTCR nTPM: 127.4
Samples: 4
Max nTPM: 195.0
Min nTPM: 53.4
RHH5235_R3607
53.4
RHH5264_R3636
126.4
RHH5207_R3578
134.9
RHH5299_R3665
195.0
T-reg nTPM: 86.6
Samples: 4
Max nTPM: 117.1
Min nTPM: 49.1
RHH5301_R3667
117.1
RHH5237_R3609
99.8
RHH5266_R3638
49.1
RHH5209_R3580
80.3
Terminal effector memory CD4 T-cell nTPM: 79.4
Samples: 2
Max nTPM: 103.4
Min nTPM: 55.4
RHH5243_R3615
55.4
RHH5272_R3644
103.4
Terminal effector memory CD8 T-cell nTPM: 149.7
Samples: 4
Max nTPM: 277.9
Min nTPM: 79.4
RHH5232_R3604
92.1
RHH5204_R3575
277.9
RHH5261_R3633
79.4
RHH5296_R3662
149.5
Vd2 gdTCR nTPM: 141.6
Samples: 4
Max nTPM: 234.3
Min nTPM: 57.4
RHH5234_R3606
91.8
RHH5206_R3577
234.3
RHH5263_R3635
57.4
RHH5298_R3664
182.8
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
The Human Protein Atlas project is funded
