MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:17.0 nTPM
HPA Brain:56.2 nTPM
GTEx:17.0 nTPM
FANTOM5:42.5 Scaled Tags Per Million
Pig:40.2 nTPM
Mouse:37.2 nTPM
Allen mouse:0.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 56.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 52.4
2586 Male, age 75, left hemisphere 55.7
1833 Male, age 53, unknown 54.6
1830 Male, age 51, unknown 53.9
2411 Female, age 72, unknown 53.3
1870 Female, age 42, unknown 52.9
2666 Male, age 74, left hemisphere 51.8
1827 Male, age 72, unknown 51.3
2019 Male, age 18, unknown 50.6
2219 Male, age 76, both hemispheres 49.7
2828 Female, age 72, unknown 49.7
Dorsal raphe nucleus
nTPM: 54.5
2047 Male, age 72, unknown 56.8
2298 Female, age 72, unknown 56.0
2750 Male, age 76, both hemispheres 54.3
1828 Male, age 53, unknown 53.4
2016 Female, age 72, unknown 51.9
Inferior colliculus
nTPM: 55.6
1848 Female, age 42, unknown 57.8
2097 Female, age 72, unknown 56.2
2849 Male, age 72, unknown 55.9
1890 Male, age 53, unknown 52.5
Median raphe nucleus
nTPM: 56.2
2220 Male, age 76, midline 56.2
Periaquaductal grey, anterior
nTPM: 52.5
1947 Male, age 18, unknown 55.9
2502 Female, age 75, unknown 52.6
1795 Male, age 51, unknown 49.1
Periaquaductal grey, dorsal
nTPM: 51.7
1840 Male, age 53, unknown 55.2
2850 Male, age 76, both hemispheres 53.2
2464 Female, age 72, unknown 50.4
1831 Male, age 72, unknown 47.9
Periaquaductal grey, lateral
nTPM: 50.8
2140 Male, age 76, both hemispheres 51.8
2053 Male, age 18, unknown 51.4
2272 Male, age 74, both hemispheres 49.1
Pretectal area
nTPM: 53.0
1944 Female, age 72, unknown 56.5
1817 Female, age 42, unknown 55.1
2273 Male, age 74, both hemispheres 54.8
2667 Female, age 75, unknown 54.8
1816 Male, age 51, unknown 54.4
2224 Female, age 72, unknown 54.0
2825 Male, age 18, unknown 53.0
1815 Male, age 53, unknown 51.2
2407 Male, age 75, both hemispheres 50.9
2007 Male, age 72, unknown 49.8
2316 Male, age 76, right hemisphere 48.6
Red nucleus
nTPM: 50.8
1821 Female, age 72, unknown 57.3
1904 Male, age 53, unknown 53.2
1865 Male, age 51, unknown 52.8
2769 Male, age 72, unknown 52.6
1954 Female, age 42, unknown 52.4
2227 Male, age 72, unknown 51.5
2503 Female, age 72, unknown 51.2
2785 Male, age 18, unknown 49.7
2823 Male, age 76, right hemisphere 49.6
2588 Male, age 74, left hemisphere 47.8
2725 Female, age 75, unknown 46.6
2584 Male, age 75, left hemisphere 44.8
Substantia nigra
nTPM: 53.1
2241 Male, age 72, unknown 59.1
1889 Female, age 72, unknown 55.6
1916 Female, age 42, unknown 55.2
2583 Male, age 75, right hemisphere 54.9
2409 Female, age 72, unknown 54.5
1851 Male, age 51, unknown 52.0
1941 Male, age 53, unknown 51.8
2699 Male, age 18, unknown 49.7
2590 Female, age 75, unknown 49.3
2665 Male, age 74, both hemispheres 48.9
Superior colliculus
nTPM: 54.0
2668 Female, age 75, unknown 60.7
2664 Male, age 75, both hemispheres 56.8
1839 Male, age 51, unknown 56.4
1796 Male, age 53, unknown 56.3
2261 Male, age 18, unknown 56.1
1895 Male, age 76, right hemisphere 51.5
2587 Male, age 74, left hemisphere 51.4
1995 Male, age 72, unknown 50.9
1913 Female, age 42, unknown 49.9
2087 Female, age 72, unknown 49.8
Ventral tegmental area
nTPM: 54.4
2410 Female, age 72, unknown 59.1
2223 Female, age 72, unknown 58.7
2218 Male, age 76, both hemispheres 54.1
1915 Female, age 42, unknown 52.3
1942 Male, age 51, unknown 51.2
2021 Male, age 53, unknown 50.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 17.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 17.0
Samples: 139

Max nTPM: 24.6
Min nTPM: 11.2
Std nTPM: 2.2
Median nTPM: 17.0
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 24.6
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 22.9
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 22.9
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 22.8
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 20.7
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 20.7
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 20.5
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 20.3
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 20.2
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 20.1
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 20.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 42.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 42.5
FF:10158-103A5 76 years, female 42.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 40.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 37.8
Samples: 4

Max nTPM: 43.4
Min nTPM: 34.3
Sample A Female 43.4
Sample B Female 34.3
Sample C Male 39.1
Sample D Male 34.4
Midbrain
nTPM: 39.8
Samples: 4

Max nTPM: 43.2
Min nTPM: 37.4
Sample A Female 41.2
Sample B Female 37.5
Sample C Male 43.2
Sample D Male 37.4
Periaqueductal gray
nTPM: 34.6
Samples: 3

Max nTPM: 36.4
Min nTPM: 32.2
Sample B Female 35.1
Sample C Male 36.4
Sample D Male 32.2
Superior colliculi
nTPM: 40.2
Samples: 4

Max nTPM: 42.9
Min nTPM: 34.5
Sample A Female 42.9
Sample B Female 34.5
Sample C Male 41.4
Sample D Male 41.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 37.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 37.2
Samples: 4

Max nTPM: 38.9
Min nTPM: 34.4
Sample A Male 34.4
Sample B Male 37.9
Sample C Female 38.9
Sample D Female 37.6

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.6
68151347 Antisense, RP_041116_01_A05, Mouse strain C57BL/6J (56 days, male) 0.9
75986068 Antisense, RP_060606_02_D03, Mouse strain C57BL/6J (56 days, male) 0.3

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