MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:119.9 nTPM
HPA Brain:132.7 nTPM
GTEx:119.9 nTPM
FANTOM5:12.0 Scaled Tags Per Million
Pig:69.0 nTPM
Mouse:43.8 nTPM
Allen mouse:0.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 132.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 122.7
2586 Male, age 75, left hemisphere 181.2
2828 Female, age 72, unknown 139.8
2019 Male, age 18, unknown 127.6
2666 Male, age 74, left hemisphere 120.4
2411 Female, age 72, unknown 118.6
1830 Male, age 51, unknown 113.9
1833 Male, age 53, unknown 111.8
1827 Male, age 72, unknown 111.2
1870 Female, age 42, unknown 107.8
2219 Male, age 76, both hemispheres 94.5
Dorsal raphe nucleus
nTPM: 92.5
2750 Male, age 76, both hemispheres 120.7
1828 Male, age 53, unknown 98.0
2016 Female, age 72, unknown 84.0
2298 Female, age 72, unknown 80.2
2047 Male, age 72, unknown 79.7
Inferior colliculus
nTPM: 101.1
1890 Male, age 53, unknown 106.2
1848 Female, age 42, unknown 104.1
2097 Female, age 72, unknown 102.2
2849 Male, age 72, unknown 92.0
Median raphe nucleus
nTPM: 80.1
2220 Male, age 76, midline 80.1
Periaquaductal grey, anterior
nTPM: 111.2
2502 Female, age 75, unknown 122.2
1795 Male, age 51, unknown 108.2
1947 Male, age 18, unknown 103.2
Periaquaductal grey, dorsal
nTPM: 73.4
2464 Female, age 72, unknown 91.5
1831 Male, age 72, unknown 84.9
1840 Male, age 53, unknown 66.6
2850 Male, age 76, both hemispheres 50.6
Periaquaductal grey, lateral
nTPM: 72.1
2272 Male, age 74, both hemispheres 83.2
2053 Male, age 18, unknown 80.4
2140 Male, age 76, both hemispheres 52.9
Pretectal area
nTPM: 107.0
2007 Male, age 72, unknown 150.1
1817 Female, age 42, unknown 134.7
1816 Male, age 51, unknown 130.6
1815 Male, age 53, unknown 123.1
1944 Female, age 72, unknown 120.6
2407 Male, age 75, both hemispheres 102.1
2667 Female, age 75, unknown 95.3
2825 Male, age 18, unknown 88.1
2316 Male, age 76, right hemisphere 83.3
2273 Male, age 74, both hemispheres 77.0
2224 Female, age 72, unknown 71.8
Red nucleus
nTPM: 132.7
2785 Male, age 18, unknown 158.2
2584 Male, age 75, left hemisphere 147.5
2769 Male, age 72, unknown 147.2
2588 Male, age 74, left hemisphere 142.6
2227 Male, age 72, unknown 139.6
2503 Female, age 72, unknown 136.4
1904 Male, age 53, unknown 133.2
1865 Male, age 51, unknown 126.9
2823 Male, age 76, right hemisphere 126.2
1954 Female, age 42, unknown 118.4
1821 Female, age 72, unknown 113.9
2725 Female, age 75, unknown 102.4
Substantia nigra
nTPM: 101.6
2583 Male, age 75, right hemisphere 139.6
2665 Male, age 74, both hemispheres 127.6
1889 Female, age 72, unknown 115.0
1916 Female, age 42, unknown 111.6
1851 Male, age 51, unknown 105.0
2590 Female, age 75, unknown 103.0
1941 Male, age 53, unknown 99.8
2699 Male, age 18, unknown 81.6
2409 Female, age 72, unknown 69.4
2241 Male, age 72, unknown 63.7
Superior colliculus
nTPM: 116.4
2668 Female, age 75, unknown 140.7
2664 Male, age 75, both hemispheres 136.7
1913 Female, age 42, unknown 124.7
2087 Female, age 72, unknown 124.2
2261 Male, age 18, unknown 122.7
1995 Male, age 72, unknown 120.3
1796 Male, age 53, unknown 115.7
2587 Male, age 74, left hemisphere 100.9
1839 Male, age 51, unknown 98.1
1895 Male, age 76, right hemisphere 80.2
Ventral tegmental area
nTPM: 105.2
2223 Female, age 72, unknown 132.1
2410 Female, age 72, unknown 110.8
1942 Male, age 51, unknown 103.7
2218 Male, age 76, both hemispheres 98.5
1915 Female, age 42, unknown 97.8
2021 Male, age 53, unknown 88.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 119.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 119.9
Samples: 183

Max nTPM: 457.6
Min nTPM: 32.3
Std nTPM: 48.9
Median nTPM: 113.5
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 457.6
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 333.0
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 316.0
GTEX-1R9K4-0011-R2b-SM-G8LLF 60-69 years, male 281.2
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 260.6
GTEX-1IDJH-0011-R2a-SM-GPI9D 70-79 years, male 232.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 216.4
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 194.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 192.4
GTEX-ZAJG-0011-R2a-SM-GNTAX 50-59 years, female 190.0
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 178.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 12.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 12.0
FF:10158-103A5 76 years, female 12.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 69.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 60.4
Samples: 4

Max nTPM: 65.8
Min nTPM: 50.2
Sample A Female 65.8
Sample B Female 50.2
Sample C Male 61.2
Sample D Male 64.2
Midbrain
nTPM: 69.0
Samples: 4

Max nTPM: 102.8
Min nTPM: 51.4
Sample A Female 102.8
Sample B Female 53.6
Sample C Male 68.0
Sample D Male 51.4
Periaqueductal gray
nTPM: 46.6
Samples: 3

Max nTPM: 49.8
Min nTPM: 43.7
Sample B Female 46.2
Sample C Male 49.8
Sample D Male 43.7
Superior colliculi
nTPM: 62.9
Samples: 4

Max nTPM: 67.5
Min nTPM: 60.1
Sample A Female 60.1
Sample B Female 60.4
Sample C Male 67.5
Sample D Male 63.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 43.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 43.8
Samples: 4

Max nTPM: 51.4
Min nTPM: 39.4
Sample A Male 51.4
Sample B Male 39.4
Sample C Female 39.6
Sample D Female 44.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
69549674 Antisense, RP_050317_04_E11, Mouse strain C57BL/6J (56 days, male) 0.1

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