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MPDU1
HPA
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                                          • SUMMARY

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                                          • MPDU1
                                          PROTEIN SUMMARY GENE INFORMATION RNA DATA ANTIBODY DATA
                                          GENERAL INFORMATIONi

                                          General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

                                          Gene namei

                                          Official gene symbol, which is typically a short form of the gene name, according to HGNC.

                                          MPDU1
                                          Synonyms CDGIf, Lec35, PQLC5, SL15, SLC66A5
                                          Gene descriptioni

                                          Full gene name according to HGNC.

                                          Mannose-P-dolichol utilization defect 1
                                          Protein classi

                                          Assigned HPA protein class(es) for the encoded protein(s).

                                          Read more
                                          Disease related genes
                                          Human disease related genes
                                          Predicted locationi

                                          All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

                                          • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.
                                          • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

                                          The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

                                          Membrane, Intracellular
                                          Protein evidence Evidence at protein level (all genes)
                                          GENE INFORMATIONi

                                          Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

                                          Chromosome 17
                                          Cytoband p13.1
                                          Chromosome location (bp) 7583529 - 7592789
                                          Number of transcriptsi

                                          Number of protein-coding transcripts from the gene as defined by Ensembl.

                                          8
                                          Ensembl ENSG00000129255 (version 109)
                                          Entrez gene 9526
                                          HGNC HGNC:7207
                                          UniProt O75352
                                          GeneCards MPDU1
                                          Antibodypedia MPDU1 antibodies


                                          PROTEIN FUNCTION
                                          Protein function (UniProt)i

                                          Useful information about the protein provided by UniProt.

                                          Required for normal utilization of mannose-dolichol phosphate (Dol-P-Man) in the synthesis of N-linked and O-linked oligosaccharides and GPI anchors.... show less
                                          Biological process (UniProt)i

                                          Keywords assigned by UniProt to proteins because they are involved in a particular biological process.

                                          Transport
                                          Gene summary (Entrez)i

                                          Useful information about the gene from Entrez

                                          This gene encodes an endoplasmic reticulum membrane protein that is required for utilization of the mannose donor mannose-P-dolichol in the synthesis of lipid-linked oligosaccharides and glycosylphosphatidylinositols. Mutations in this gene result in congenital disorder of glycosylation type If. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Dec 2008]... show less
                                          PROTEIN INFORMATIONi

                                          The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

                                          The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

                                          The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

                                          The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.

                                          Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
                                          (predicted)
                                          Transmembrane regions
                                          (predicted)
                                          MPDU1-201
                                          ENSP00000250124
                                          ENST00000250124
                                          O75352
                                          [Direct mapping] Mannose-P-dolichol utilization defect 1 protein
                                          A0A0S2Z4W8
                                          [Target identity:100%; Query identity:100%] Mannose-P-dolichol utilization defect 1 isoform 1
                                          Predicted membrane proteins
                                             Prediction method-based
                                             Membrane proteins predicted by MDM
                                             MEMSAT3 predicted membrane proteins
                                             MEMSAT-SVM predicted membrane proteins
                                             Phobius predicted membrane proteins
                                             SCAMPI predicted membrane proteins
                                             SPOCTOPUS predicted membrane proteins
                                             THUMBUP predicted membrane proteins
                                             TMHMM predicted membrane proteins
                                             # TM segments-based
                                             7TM proteins predicted by MDM
                                          Disease related genes
                                          Human disease related genes
                                             Congenital disorders of metabolism
                                             Congenital disorders of glycan/glycoprotein metabolism
                                          Mapped to neXtProt
                                             neXtProt - Evidence at protein level
                                          Protein evidence (Kim et al 2014)
                                          Protein evidence (Ezkurdia et al 2014)
                                             deepTMHMM predicted membrane proteins
                                          Show all
                                          GO:0005515 [protein binding]
                                          GO:0005789 [endoplasmic reticulum membrane]
                                          GO:0006457 [protein folding]
                                          GO:0006488 [dolichol-linked oligosaccharide biosynthetic process]
                                          GO:0009312 [oligosaccharide biosynthetic process]
                                          GO:0016020 [membrane]
                                          Show all
                                          247 aa
                                          26.6 kDa
                                          No 7
                                          MPDU1-203
                                          ENSP00000379758
                                          ENST00000396501
                                          J3QW43
                                          [Direct mapping] Mannose-P-dolichol utilization defect 1 protein
                                          Predicted membrane proteins
                                             Prediction method-based
                                             Membrane proteins predicted by MDM
                                             MEMSAT3 predicted membrane proteins
                                             MEMSAT-SVM predicted membrane proteins
                                             Phobius predicted membrane proteins
                                             SCAMPI predicted membrane proteins
                                             SPOCTOPUS predicted membrane proteins
                                             THUMBUP predicted membrane proteins
                                             # TM segments-based
                                             3TM proteins predicted by MDM
                                          Human disease related genes
                                             Congenital disorders of metabolism
                                             Congenital disorders of glycan/glycoprotein metabolism
                                          Protein evidence (Ezkurdia et al 2014)
                                             deepTMHMM predicted membrane proteins
                                          Show all
                                          GO:0016020 [membrane]
                                          192 aa
                                          20.9 kDa
                                          No 3
                                          MPDU1-204
                                          ENSP00000414071
                                          ENST00000423172
                                          O75352
                                          [Direct mapping] Mannose-P-dolichol utilization defect 1 protein
                                          Predicted membrane proteins
                                             Prediction method-based
                                             Membrane proteins predicted by MDM
                                             MEMSAT3 predicted membrane proteins
                                             MEMSAT-SVM predicted membrane proteins
                                             SCAMPI predicted membrane proteins
                                             SPOCTOPUS predicted membrane proteins
                                             # TM segments-based
                                             2TM proteins predicted by MDM
                                          Disease related genes
                                          Human disease related genes
                                             Congenital disorders of metabolism
                                             Congenital disorders of glycan/glycoprotein metabolism
                                          Mapped to neXtProt
                                             neXtProt - Evidence at protein level
                                          Protein evidence (Ezkurdia et al 2014)
                                             deepTMHMM predicted membrane proteins
                                          Show all
                                          GO:0005515 [protein binding]
                                          GO:0005789 [endoplasmic reticulum membrane]
                                          GO:0006457 [protein folding]
                                          GO:0006488 [dolichol-linked oligosaccharide biosynthetic process]
                                          GO:0009312 [oligosaccharide biosynthetic process]
                                          GO:0016020 [membrane]
                                          Show all
                                          186 aa
                                          19.8 kDa
                                          No 2
                                          MPDU1-218
                                          ENSP00000464158
                                          ENST00000579445
                                          J3QRD5
                                          [Direct mapping] Mannose-P-dolichol utilization defect 1 protein
                                          Predicted membrane proteins
                                             Prediction method-based
                                             Membrane proteins predicted by MDM
                                             MEMSAT3 predicted membrane proteins
                                             MEMSAT-SVM predicted membrane proteins
                                             Phobius predicted membrane proteins
                                             SCAMPI predicted membrane proteins
                                             SPOCTOPUS predicted membrane proteins
                                             THUMBUP predicted membrane proteins
                                             TMHMM predicted membrane proteins
                                             # TM segments-based
                                             5TM proteins predicted by MDM
                                          Human disease related genes
                                             Congenital disorders of metabolism
                                             Congenital disorders of glycan/glycoprotein metabolism
                                          Protein evidence (Ezkurdia et al 2014)
                                             deepTMHMM predicted membrane proteins
                                          Show all
                                          GO:0016020 [membrane]
                                          193 aa
                                          20.7 kDa
                                          No 5
                                          MPDU1-221
                                          ENSP00000463966
                                          ENST00000581380
                                          J3QQZ4
                                          [Direct mapping] Mannose-P-dolichol utilization defect 1 protein
                                          Predicted membrane proteins
                                             Prediction method-based
                                             Membrane proteins predicted by MDM
                                             MEMSAT3 predicted membrane proteins
                                             MEMSAT-SVM predicted membrane proteins
                                             Phobius predicted membrane proteins
                                             SCAMPI predicted membrane proteins
                                             SPOCTOPUS predicted membrane proteins
                                             THUMBUP predicted membrane proteins
                                             # TM segments-based
                                             3TM proteins predicted by MDM
                                          Human disease related genes
                                             Congenital disorders of metabolism
                                             Congenital disorders of glycan/glycoprotein metabolism
                                          Protein evidence (Ezkurdia et al 2014)
                                             deepTMHMM predicted membrane proteins
                                          Show all
                                          GO:0016020 [membrane]
                                          152 aa
                                          16.7 kDa
                                          No 3
                                          MPDU1-223
                                          ENSP00000462500
                                          ENST00000582151
                                          J3KSI4
                                          [Direct mapping] Mannose-P-dolichol utilization defect 1 protein
                                          Predicted intracellular proteins
                                             Intracellular proteins predicted by MDM and MDSEC
                                          Human disease related genes
                                             Congenital disorders of metabolism
                                             Congenital disorders of glycan/glycoprotein metabolism
                                          Protein evidence (Ezkurdia et al 2014)
                                          Show all
                                          52 aa
                                          5.8 kDa
                                          No 0
                                          MPDU1-224
                                          ENSP00000462839
                                          ENST00000584378
                                          J3KT75
                                          [Direct mapping] Mannose-P-dolichol utilization defect 1 protein
                                          Predicted membrane proteins
                                             Prediction method-based
                                             Membrane proteins predicted by MDM
                                             MEMSAT3 predicted membrane proteins
                                             MEMSAT-SVM predicted membrane proteins
                                             SCAMPI predicted membrane proteins
                                             SPOCTOPUS predicted membrane proteins
                                             # TM segments-based
                                             2TM proteins predicted by MDM
                                          Human disease related genes
                                             Congenital disorders of metabolism
                                             Congenital disorders of glycan/glycoprotein metabolism
                                          Protein evidence (Ezkurdia et al 2014)
                                             deepTMHMM predicted membrane proteins
                                          Show all
                                          GO:0016020 [membrane]
                                          154 aa
                                          16.5 kDa
                                          No 2
                                          MPDU1-227
                                          ENSP00000463037
                                          ENST00000585217
                                          J3KTK8
                                          [Direct mapping] Mannose-P-dolichol utilization defect 1 protein
                                          Predicted membrane proteins
                                             Prediction method-based
                                             Membrane proteins predicted by MDM
                                             MEMSAT3 predicted membrane proteins
                                             MEMSAT-SVM predicted membrane proteins
                                             Phobius predicted membrane proteins
                                             SCAMPI predicted membrane proteins
                                             SPOCTOPUS predicted membrane proteins
                                             # TM segments-based
                                             3TM proteins predicted by MDM
                                          Human disease related genes
                                             Congenital disorders of metabolism
                                             Congenital disorders of glycan/glycoprotein metabolism
                                          Protein evidence (Ezkurdia et al 2014)
                                             deepTMHMM predicted membrane proteins
                                          Show all
                                          GO:0016020 [membrane]
                                          116 aa
                                          12.7 kDa
                                          No 3

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