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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
34.0
nTPM
HPA Brain:
113.2
nTPM
GTEx:
34.0
nTPM
FANTOM5:
33.2
Scaled Tags Per Million
Pig:
123.3
nTPM
Mouse:
88.8
nTPM
Allen mouse:
8.0
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
113.2
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 53.7
2019
Male, age 18, unknown
104.5
1827
Male, age 72, unknown
73.2
2219
Male, age 76, both hemispheres
67.0
2666
Male, age 74, left hemisphere
65.2
2586
Male, age 75, left hemisphere
52.9
2828
Female, age 72, unknown
51.6
2411
Female, age 72, unknown
34.8
1870
Female, age 42, unknown
31.4
1833
Male, age 53, unknown
30.5
1830
Male, age 51, unknown
26.2
Dorsal raphe nucleus nTPM: 28.7
2298
Female, age 72, unknown
41.9
2750
Male, age 76, both hemispheres
31.2
1828
Male, age 53, unknown
29.0
2047
Male, age 72, unknown
22.5
2016
Female, age 72, unknown
19.0
Inferior colliculus nTPM: 33.1
2097
Female, age 72, unknown
43.0
1890
Male, age 53, unknown
34.5
1848
Female, age 42, unknown
28.2
2849
Male, age 72, unknown
26.9
Median raphe nucleus nTPM: 39.5
2220
Male, age 76, midline
39.5
Periaquaductal grey, anterior nTPM: 45.3
1795
Male, age 51, unknown
74.1
2502
Female, age 75, unknown
41.6
1947
Male, age 18, unknown
20.3
Periaquaductal grey, dorsal nTPM: 41.3
1831
Male, age 72, unknown
63.3
2850
Male, age 76, both hemispheres
37.0
1840
Male, age 53, unknown
33.4
2464
Female, age 72, unknown
31.8
Periaquaductal grey, lateral nTPM: 37.0
2053
Male, age 18, unknown
42.2
2272
Male, age 74, both hemispheres
37.0
2140
Male, age 76, both hemispheres
31.7
Pretectal area nTPM: 113.2
1816
Male, age 51, unknown
230.6
1944
Female, age 72, unknown
204.3
1815
Male, age 53, unknown
188.7
1817
Female, age 42, unknown
183.5
2007
Male, age 72, unknown
175.5
2273
Male, age 74, both hemispheres
57.4
2407
Male, age 75, both hemispheres
53.8
2667
Female, age 75, unknown
53.8
2224
Female, age 72, unknown
36.4
2316
Male, age 76, right hemisphere
35.6
2825
Male, age 18, unknown
25.7
Red nucleus nTPM: 33.6
2785
Male, age 18, unknown
105.4
2584
Male, age 75, left hemisphere
60.8
2725
Female, age 75, unknown
40.5
2588
Male, age 74, left hemisphere
33.4
2503
Female, age 72, unknown
23.6
2823
Male, age 76, right hemisphere
22.8
1904
Male, age 53, unknown
21.1
1821
Female, age 72, unknown
21.0
1865
Male, age 51, unknown
20.2
2769
Male, age 72, unknown
18.0
1954
Female, age 42, unknown
17.9
2227
Male, age 72, unknown
17.9
Substantia nigra nTPM: 45.3
1889
Female, age 72, unknown
121.8
2665
Male, age 74, both hemispheres
48.0
1916
Female, age 42, unknown
44.7
1851
Male, age 51, unknown
43.5
2583
Male, age 75, right hemisphere
42.9
1941
Male, age 53, unknown
36.8
2590
Female, age 75, unknown
33.1
2409
Female, age 72, unknown
32.3
2241
Male, age 72, unknown
26.3
2699
Male, age 18, unknown
23.4
Superior colliculus nTPM: 71.3
2087
Female, age 72, unknown
136.1
1913
Female, age 42, unknown
86.8
1796
Male, age 53, unknown
85.1
2668
Female, age 75, unknown
84.5
2261
Male, age 18, unknown
78.0
1995
Male, age 72, unknown
72.2
2664
Male, age 75, both hemispheres
59.4
1895
Male, age 76, right hemisphere
42.1
2587
Male, age 74, left hemisphere
40.5
1839
Male, age 51, unknown
28.0
Ventral tegmental area nTPM: 33.1
2218
Male, age 76, both hemispheres
45.3
2410
Female, age 72, unknown
39.5
1942
Male, age 51, unknown
35.0
1915
Female, age 42, unknown
32.3
2021
Male, age 53, unknown
27.4
2223
Female, age 72, unknown
19.1
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
34.0
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 34.0
Samples: 139
Max nTPM: 125.0
Min nTPM: 6.4
Std nTPM: 24.3
Median nTPM: 24.6
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
125.0
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
117.1
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
97.9
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
86.9
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
86.5
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
84.7
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
83.4
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
81.7
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
80.6
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
79.2
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
77.8
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
76.7
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
74.8
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
73.0
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
69.6
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
68.6
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
67.6
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
66.1
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
65.5
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
62.0
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
61.4
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
60.7
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
59.4
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
55.4
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
55.1
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
54.7
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
53.9
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
53.6
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
52.0
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
51.6
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
50.2
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
49.9
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
49.6
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
48.7
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
48.2
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
47.7
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
47.1
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
46.0
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
45.9
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
44.4
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
43.8
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
42.2
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
41.7
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
41.0
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
40.3
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
38.5
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
38.4
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
37.8
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
35.9
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
35.8
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
33.7
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
33.2
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
32.8
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
32.5
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
32.4
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
32.0
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
31.6
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
31.2
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
31.2
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
30.7
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
29.8
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
29.8
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
29.8
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
29.5
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
26.4
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
25.5
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
25.1
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
25.0
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
24.8
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
24.6
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
23.3
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
23.3
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
22.5
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
22.2
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
21.9
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
21.7
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
20.9
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
20.9
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
20.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
20.6
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
20.5
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
20.3
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
20.1
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
19.4
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
19.4
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
19.4
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
19.4
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
18.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
18.4
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
18.3
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
18.3
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
17.9
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
17.9
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
17.8
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
17.7
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
17.1
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
17.0
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
16.6
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
16.5
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
16.5
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
16.5
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
16.4
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
16.3
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
16.2
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
15.9
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
15.9
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
15.7
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
15.6
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
15.6
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
15.2
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
15.2
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
14.4
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
14.3
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
13.8
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
13.4
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
13.4
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
13.2
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
13.0
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
13.0
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
12.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
12.6
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
12.3
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
12.2
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
12.1
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
11.7
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
11.4
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
11.0
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
10.8
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
10.4
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
10.1
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
10.0
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
9.8
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
9.6
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
9.5
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
8.5
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
8.0
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
7.8
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
7.6
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
6.4
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
88.8
Mouse sample
Sample description
nTPM
Midbrain nTPM: 88.8
Samples: 4
Max nTPM: 91.4
Min nTPM: 86.3
Sample A
Male
91.4
Sample B
Male
86.3
Sample C
Female
89.6
Sample D
Female
87.8
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.