MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:49.4 nTPM
HPA Brain:34.1 nTPM
GTEx:49.4 nTPM
FANTOM5:20.7 Scaled Tags Per Million
Pig:117.2 nTPM
Mouse:53.2 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 34.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 27.5
2828 Female, age 72, unknown 37.8
1870 Female, age 42, unknown 31.1
2411 Female, age 72, unknown 30.3
2586 Male, age 75, left hemisphere 30.3
1827 Male, age 72, unknown 30.0
1833 Male, age 53, unknown 27.1
1830 Male, age 51, unknown 26.4
2019 Male, age 18, unknown 23.3
2219 Male, age 76, both hemispheres 21.4
2666 Male, age 74, left hemisphere 17.6
Dorsal raphe nucleus
nTPM: 34.1
2298 Female, age 72, unknown 44.7
2016 Female, age 72, unknown 37.4
2750 Male, age 76, both hemispheres 33.0
1828 Male, age 53, unknown 31.0
2047 Male, age 72, unknown 24.2
Inferior colliculus
nTPM: 27.7
2097 Female, age 72, unknown 31.9
1848 Female, age 42, unknown 28.2
2849 Male, age 72, unknown 25.5
1890 Male, age 53, unknown 25.0
Median raphe nucleus
nTPM: 16.0
2220 Male, age 76, midline 16.0
Periaquaductal grey, anterior
nTPM: 29.7
2502 Female, age 75, unknown 32.4
1795 Male, age 51, unknown 30.0
1947 Male, age 18, unknown 26.7
Periaquaductal grey, dorsal
nTPM: 27.7
1840 Male, age 53, unknown 34.2
2464 Female, age 72, unknown 30.2
2850 Male, age 76, both hemispheres 24.5
1831 Male, age 72, unknown 21.8
Periaquaductal grey, lateral
nTPM: 30.8
2053 Male, age 18, unknown 32.6
2140 Male, age 76, both hemispheres 32.3
2272 Male, age 74, both hemispheres 27.5
Pretectal area
nTPM: 29.4
2273 Male, age 74, both hemispheres 36.4
2667 Female, age 75, unknown 34.2
2316 Male, age 76, right hemisphere 33.8
2224 Female, age 72, unknown 31.9
1815 Male, age 53, unknown 29.0
2825 Male, age 18, unknown 28.6
1944 Female, age 72, unknown 28.2
1817 Female, age 42, unknown 27.9
1816 Male, age 51, unknown 26.1
2007 Male, age 72, unknown 24.7
2407 Male, age 75, both hemispheres 22.3
Red nucleus
nTPM: 31.8
2769 Male, age 72, unknown 40.5
2227 Male, age 72, unknown 40.2
1954 Female, age 42, unknown 36.2
2823 Male, age 76, right hemisphere 35.8
2503 Female, age 72, unknown 33.5
1904 Male, age 53, unknown 33.3
1865 Male, age 51, unknown 31.5
2725 Female, age 75, unknown 30.4
1821 Female, age 72, unknown 29.5
2785 Male, age 18, unknown 24.9
2584 Male, age 75, left hemisphere 23.1
2588 Male, age 74, left hemisphere 22.9
Substantia nigra
nTPM: 24.6
2699 Male, age 18, unknown 34.1
1851 Male, age 51, unknown 29.4
1916 Female, age 42, unknown 28.2
2583 Male, age 75, right hemisphere 27.6
2590 Female, age 75, unknown 27.4
1889 Female, age 72, unknown 26.5
2241 Male, age 72, unknown 21.0
2665 Male, age 74, both hemispheres 18.2
1941 Male, age 53, unknown 17.3
2409 Female, age 72, unknown 15.8
Superior colliculus
nTPM: 30.0
1995 Male, age 72, unknown 39.4
1796 Male, age 53, unknown 32.6
2261 Male, age 18, unknown 32.1
1913 Female, age 42, unknown 31.6
2087 Female, age 72, unknown 31.0
1895 Male, age 76, right hemisphere 30.8
2664 Male, age 75, both hemispheres 29.3
1839 Male, age 51, unknown 27.6
2587 Male, age 74, left hemisphere 25.1
2668 Female, age 75, unknown 20.6
Ventral tegmental area
nTPM: 26.0
2410 Female, age 72, unknown 31.0
2021 Male, age 53, unknown 28.7
1915 Female, age 42, unknown 28.2
1942 Male, age 51, unknown 25.1
2218 Male, age 76, both hemispheres 23.1
2223 Female, age 72, unknown 20.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 49.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 49.4
Samples: 139

Max nTPM: 164.5
Min nTPM: 13.3
Std nTPM: 24.0
Median nTPM: 44.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 164.5
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 142.0
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 120.2
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 109.5
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 101.8
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 99.4
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 94.6
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 93.5
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 93.1
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 91.9
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 90.8
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 20.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 20.7
FF:10158-103A5 76 years, female 20.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 117.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 104.7
Samples: 4

Max nTPM: 126.4
Min nTPM: 79.9
Sample A Female 126.4
Sample B Female 118.6
Sample C Male 79.9
Sample D Male 93.9
Midbrain
nTPM: 117.2
Samples: 4

Max nTPM: 207.9
Min nTPM: 57.7
Sample A Female 207.9
Sample B Female 140.0
Sample C Male 63.1
Sample D Male 57.7
Periaqueductal gray
nTPM: 106.6
Samples: 3

Max nTPM: 137.7
Min nTPM: 85.7
Sample B Female 137.7
Sample C Male 96.5
Sample D Male 85.7
Superior colliculi
nTPM: 73.4
Samples: 4

Max nTPM: 103.3
Min nTPM: 57.7
Sample A Female 103.3
Sample B Female 57.7
Sample C Male 62.9
Sample D Male 69.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 53.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 53.2
Samples: 4

Max nTPM: 64.6
Min nTPM: 39.4
Sample A Male 64.6
Sample B Male 53.5
Sample C Female 39.4
Sample D Female 55.4

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
70192111 Antisense, RP_050517_01_C07, Mouse strain C57BL/6J (56 days, male) 0.2

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