MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:73.8 nTPM
HPA Brain:65.7 nTPM
GTEx:73.8 nTPM
FANTOM5:37.5 Scaled Tags Per Million
Pig:103.4 nTPM
Mouse:207.7 nTPM
Allen mouse:1.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 65.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 60.9
2411 Female, age 72, unknown 69.7
1870 Female, age 42, unknown 64.4
1833 Male, age 53, unknown 62.9
2586 Male, age 75, left hemisphere 62.1
1827 Male, age 72, unknown 61.5
2019 Male, age 18, unknown 60.2
2219 Male, age 76, both hemispheres 59.9
2828 Female, age 72, unknown 57.7
1830 Male, age 51, unknown 57.1
2666 Male, age 74, left hemisphere 53.4
Dorsal raphe nucleus
nTPM: 65.7
2298 Female, age 72, unknown 77.6
2750 Male, age 76, both hemispheres 69.6
1828 Male, age 53, unknown 63.6
2047 Male, age 72, unknown 59.4
2016 Female, age 72, unknown 58.0
Inferior colliculus
nTPM: 60.1
2097 Female, age 72, unknown 67.9
1890 Male, age 53, unknown 57.8
1848 Female, age 42, unknown 57.4
2849 Male, age 72, unknown 57.2
Median raphe nucleus
nTPM: 63.8
2220 Male, age 76, midline 63.8
Periaquaductal grey, anterior
nTPM: 65.3
1947 Male, age 18, unknown 68.3
2502 Female, age 75, unknown 67.4
1795 Male, age 51, unknown 60.1
Periaquaductal grey, dorsal
nTPM: 56.7
1840 Male, age 53, unknown 61.2
2464 Female, age 72, unknown 56.1
1831 Male, age 72, unknown 54.7
2850 Male, age 76, both hemispheres 54.7
Periaquaductal grey, lateral
nTPM: 57.8
2272 Male, age 74, both hemispheres 68.9
2053 Male, age 18, unknown 54.9
2140 Male, age 76, both hemispheres 49.4
Pretectal area
nTPM: 62.8
2007 Male, age 72, unknown 71.5
1816 Male, age 51, unknown 67.8
2667 Female, age 75, unknown 66.5
1944 Female, age 72, unknown 66.1
2224 Female, age 72, unknown 65.5
1817 Female, age 42, unknown 64.2
1815 Male, age 53, unknown 63.5
2273 Male, age 74, both hemispheres 61.7
2825 Male, age 18, unknown 58.8
2316 Male, age 76, right hemisphere 53.0
2407 Male, age 75, both hemispheres 52.5
Red nucleus
nTPM: 57.8
2785 Male, age 18, unknown 62.7
1821 Female, age 72, unknown 62.4
2503 Female, age 72, unknown 60.2
1904 Male, age 53, unknown 58.8
2769 Male, age 72, unknown 58.8
2227 Male, age 72, unknown 58.4
2584 Male, age 75, left hemisphere 57.7
2725 Female, age 75, unknown 57.3
1865 Male, age 51, unknown 54.8
2588 Male, age 74, left hemisphere 54.5
1954 Female, age 42, unknown 54.2
2823 Male, age 76, right hemisphere 53.1
Substantia nigra
nTPM: 62.4
1916 Female, age 42, unknown 75.8
1851 Male, age 51, unknown 73.1
1889 Female, age 72, unknown 68.7
2665 Male, age 74, both hemispheres 67.2
2241 Male, age 72, unknown 65.9
2699 Male, age 18, unknown 60.2
1941 Male, age 53, unknown 60.0
2583 Male, age 75, right hemisphere 53.8
2590 Female, age 75, unknown 52.7
2409 Female, age 72, unknown 46.5
Superior colliculus
nTPM: 59.6
1796 Male, age 53, unknown 63.8
2668 Female, age 75, unknown 63.8
2087 Female, age 72, unknown 60.9
1895 Male, age 76, right hemisphere 60.0
2261 Male, age 18, unknown 59.9
2587 Male, age 74, left hemisphere 59.6
2664 Male, age 75, both hemispheres 57.5
1913 Female, age 42, unknown 57.4
1839 Male, age 51, unknown 57.1
1995 Male, age 72, unknown 55.6
Ventral tegmental area
nTPM: 63.0
2410 Female, age 72, unknown 71.3
2218 Male, age 76, both hemispheres 69.2
1915 Female, age 42, unknown 65.4
1942 Male, age 51, unknown 61.8
2021 Male, age 53, unknown 55.3
2223 Female, age 72, unknown 54.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 73.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 73.8
Samples: 139

Max nTPM: 115.1
Min nTPM: 44.1
Std nTPM: 14.5
Median nTPM: 72.1
GTEX-13N2G-0011-R2a-SM-5MR4Q 60-69 years, male 115.1
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 114.6
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 108.3
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 103.9
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 103.5
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 103.5
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 102.2
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 100.2
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 99.0
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 98.7
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 96.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 37.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 37.5
FF:10158-103A5 76 years, female 37.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 103.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 93.9
Samples: 4

Max nTPM: 125.3
Min nTPM: 70.9
Sample A Female 125.3
Sample B Female 81.0
Sample C Male 98.3
Sample D Male 70.9
Midbrain
nTPM: 103.4
Samples: 4

Max nTPM: 122.9
Min nTPM: 90.2
Sample A Female 122.9
Sample B Female 90.2
Sample C Male 104.8
Sample D Male 95.7
Periaqueductal gray
nTPM: 89.1
Samples: 3

Max nTPM: 98.7
Min nTPM: 82.9
Sample B Female 82.9
Sample C Male 98.7
Sample D Male 85.8
Superior colliculi
nTPM: 102.8
Samples: 4

Max nTPM: 127.5
Min nTPM: 89.5
Sample A Female 127.5
Sample B Female 97.2
Sample C Male 96.9
Sample D Male 89.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 207.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 207.7
Samples: 4

Max nTPM: 214.6
Min nTPM: 197.6
Sample A Male 213.4
Sample B Male 205.2
Sample C Female 197.6
Sample D Female 214.6

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.9
75695659 Antisense, RP_060518_04_C10, Mouse strain C57BL/6J (56 days, male) 1.9

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