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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:55.4 nTPM
HPA Brain:52.1 nTPM
GTEx:55.4 nTPM
FANTOM5:32.9 Scaled Tags Per Million
Pig:91.6 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

52.1
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 52.1
1981 Female, age 72, midline 61.4
2565 Male, age 75, midline 54.0
2194 Female, age 79, both hemispheres 53.8
2816 Male, age 47, midline 49.6
2048 Male, age 55, midline 41.6
Cervical spinal cord, dorsal horn
nTPM: 52.0
2173 Female, age 72, unknown 63.4
2296 Male, age 66, both hemispheres 60.8
2069 Male, age 47, both hemispheres 53.2
1877 Male, age 55, unknown 48.3
2297 Male, age 75, both hemispheres 45.2
2721 Male, age 90, both hemispheres 40.8
Cervical spinal cord, ventral horn
nTPM: 51.1
2098 Female, age 72, unknown 61.1
2809 Male, age 90, both hemispheres 56.0
2068 Male, age 55, unknown 53.7
2820 Female, age 79, both hemispheres 47.1
2295 Male, age 66, both hemispheres 45.4
2480 Male, age 75, both hemispheres 43.2

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

55.4
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 55.4
Samples: 159

Max nTPM: 89.6
Min nTPM: 29.6
Std nTPM: 12.0
Median nTPM: 54.1
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 89.6
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 87.7
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 87.2
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 84.0
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 83.5
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 80.6
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 79.3
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 78.5
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 78.3
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 77.2
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 77.1
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 77.0
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 76.2
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 75.0
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 74.7
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 73.0
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 71.8
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 71.6
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 71.0
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 70.9
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 70.0
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 70.0
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 69.5
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 68.4
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 68.2
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 67.8
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 66.7
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 66.2
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 66.1
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 66.0
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 65.3
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 65.1
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 64.5
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 64.4
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 64.0
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 62.8
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 62.4
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 62.1
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 61.7
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 61.5
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 61.4
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 60.7
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 60.6
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 60.6
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 60.2
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 60.1
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 59.8
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 59.5
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 59.4
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 59.2
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 59.2
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 59.0
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 58.9
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 58.9
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 58.8
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 58.2
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 57.9
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 57.8
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 57.4
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 57.2
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 57.2
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 56.6
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 56.5
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 56.4
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 55.8
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 55.5
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 55.5
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 55.5
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 55.5
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 55.4
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 55.4
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 55.4
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 55.3
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 55.1
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 54.9
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 54.9
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 54.6
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 54.3
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 54.2
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 54.1
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 54.1
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 54.0
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 53.9
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 53.7
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 53.6
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 53.4
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 53.4
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 53.4
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 52.9
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 52.8
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 52.4
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 51.9
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 51.9
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 51.7
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 51.4
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 51.3
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 51.0
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 50.7
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 50.7
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 50.3
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 50.2
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 50.2
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 50.2
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 50.2
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 48.9
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 48.7
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 48.7
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 48.6
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 48.6
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 48.5
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 48.4
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 48.3
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 48.1
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 47.8
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 47.6
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 47.4
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 47.2
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 47.1
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 46.9
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 46.4
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 46.3
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 46.2
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 46.0
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 45.9
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 45.8
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 45.5
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 45.4
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 45.3
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 44.6
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 44.6
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 44.2
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 44.2
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 43.9
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 43.4
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 43.3
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 42.8
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 42.8
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 42.7
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 42.6
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 42.4
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 42.2
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 41.8
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 41.6
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 41.2
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 40.4
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 40.1
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 39.8
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 39.8
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 39.7
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 38.9
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 38.8
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 38.1
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 37.7
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 37.1
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 36.2
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 36.0
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 35.9
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 35.2
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 29.6
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

32.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 32.9
FF:10181-103D1 60 years, female 39.0
FF:10159-103A6 76 years, female 26.8

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

91.6
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 83.4
Samples: 4

Max nTPM: 101.8
Min nTPM: 71.5
Sample A Female 71.5
Sample B Female 81.0
Sample C Male 101.8
Sample D Male 79.3
Ventral spinal cord
nTPM: 91.6
Samples: 4

Max nTPM: 97.5
Min nTPM: 76.8
Sample A Female 76.8
Sample B Female 95.9
Sample C Male 97.5
Sample D Male 96.2

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