MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:82.4 nTPM
HPA Brain:74.2 nTPM
GTEx:82.4 nTPM
FANTOM5:45.1 Scaled Tags Per Million
Pig:83.2 nTPM
Mouse:192.1 nTPM
Allen mouse:12.6 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 74.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 57.9
1827 Male, age 72, unknown 63.7
1870 Female, age 42, unknown 62.6
2411 Female, age 72, unknown 61.6
2586 Male, age 75, left hemisphere 61.6
1833 Male, age 53, unknown 61.0
2219 Male, age 76, both hemispheres 59.2
2828 Female, age 72, unknown 53.8
2019 Male, age 18, unknown 52.8
2666 Male, age 74, left hemisphere 51.5
1830 Male, age 51, unknown 50.8
Dorsal raphe nucleus
nTPM: 67.3
2298 Female, age 72, unknown 84.3
2016 Female, age 72, unknown 69.1
1828 Male, age 53, unknown 63.1
2047 Male, age 72, unknown 61.3
2750 Male, age 76, both hemispheres 58.5
Inferior colliculus
nTPM: 56.5
2849 Male, age 72, unknown 63.0
1848 Female, age 42, unknown 56.5
2097 Female, age 72, unknown 53.8
1890 Male, age 53, unknown 52.9
Median raphe nucleus
nTPM: 68.7
2220 Male, age 76, midline 68.7
Periaquaductal grey, anterior
nTPM: 70.7
1795 Male, age 51, unknown 76.6
1947 Male, age 18, unknown 72.4
2502 Female, age 75, unknown 63.2
Periaquaductal grey, dorsal
nTPM: 66.5
2850 Male, age 76, both hemispheres 81.2
1840 Male, age 53, unknown 70.0
2464 Female, age 72, unknown 59.3
1831 Male, age 72, unknown 55.6
Periaquaductal grey, lateral
nTPM: 74.2
2272 Male, age 74, both hemispheres 91.1
2140 Male, age 76, both hemispheres 69.5
2053 Male, age 18, unknown 62.1
Pretectal area
nTPM: 60.7
2273 Male, age 74, both hemispheres 81.4
2825 Male, age 18, unknown 71.0
2224 Female, age 72, unknown 70.5
1817 Female, age 42, unknown 62.3
2007 Male, age 72, unknown 59.0
1815 Male, age 53, unknown 58.1
2667 Female, age 75, unknown 56.9
1816 Male, age 51, unknown 56.8
2316 Male, age 76, right hemisphere 55.6
2407 Male, age 75, both hemispheres 49.0
1944 Female, age 72, unknown 47.1
Red nucleus
nTPM: 52.9
1821 Female, age 72, unknown 62.7
1954 Female, age 42, unknown 56.9
2227 Male, age 72, unknown 56.4
1904 Male, age 53, unknown 56.2
1865 Male, age 51, unknown 55.5
2503 Female, age 72, unknown 55.0
2769 Male, age 72, unknown 54.8
2725 Female, age 75, unknown 54.5
2785 Male, age 18, unknown 51.1
2823 Male, age 76, right hemisphere 47.0
2588 Male, age 74, left hemisphere 43.4
2584 Male, age 75, left hemisphere 41.8
Substantia nigra
nTPM: 54.6
2590 Female, age 75, unknown 59.7
1851 Male, age 51, unknown 57.4
2665 Male, age 74, both hemispheres 57.1
2699 Male, age 18, unknown 56.7
1889 Female, age 72, unknown 55.1
2583 Male, age 75, right hemisphere 54.0
2409 Female, age 72, unknown 53.4
1916 Female, age 42, unknown 52.1
2241 Male, age 72, unknown 50.9
1941 Male, age 53, unknown 49.9
Superior colliculus
nTPM: 56.6
2587 Male, age 74, left hemisphere 63.2
1839 Male, age 51, unknown 60.9
2261 Male, age 18, unknown 59.2
1913 Female, age 42, unknown 58.6
1796 Male, age 53, unknown 58.5
2668 Female, age 75, unknown 58.5
1995 Male, age 72, unknown 57.4
2664 Male, age 75, both hemispheres 53.1
1895 Male, age 76, right hemisphere 51.3
2087 Female, age 72, unknown 45.0
Ventral tegmental area
nTPM: 57.5
1915 Female, age 42, unknown 62.4
2218 Male, age 76, both hemispheres 60.5
2410 Female, age 72, unknown 59.9
2021 Male, age 53, unknown 58.3
1942 Male, age 51, unknown 52.6
2223 Female, age 72, unknown 51.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 82.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 82.4
Samples: 183

Max nTPM: 147.7
Min nTPM: 54.5
Std nTPM: 16.7
Median nTPM: 80.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 147.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 141.5
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 140.3
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 130.4
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 120.7
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 119.7
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 118.6
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 117.6
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 117.5
GTEX-1R9K4-0011-R2b-SM-G8LLF 60-69 years, male 113.1
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 111.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 45.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 45.1
FF:10158-103A5 76 years, female 45.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 83.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 74.1
Samples: 4

Max nTPM: 85.5
Min nTPM: 65.5
Sample A Female 85.5
Sample B Female 65.5
Sample C Male 74.8
Sample D Male 70.4
Midbrain
nTPM: 80.9
Samples: 4

Max nTPM: 107.2
Min nTPM: 71.3
Sample A Female 107.2
Sample B Female 71.5
Sample C Male 71.3
Sample D Male 73.4
Periaqueductal gray
nTPM: 76.7
Samples: 3

Max nTPM: 89.4
Min nTPM: 67.6
Sample B Female 67.6
Sample C Male 89.4
Sample D Male 73.2
Superior colliculi
nTPM: 83.2
Samples: 4

Max nTPM: 103.4
Min nTPM: 74.2
Sample A Female 103.4
Sample B Female 80.2
Sample C Male 75.0
Sample D Male 74.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 192.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 192.1
Samples: 4

Max nTPM: 203.7
Min nTPM: 176.5
Sample A Male 202.3
Sample B Male 185.8
Sample C Female 176.5
Sample D Female 203.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 12.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 12.6
68920713 Antisense, RP_050303_01_A12, Mouse strain C57BL/6J (56 days, male) 12.6

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