We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
155.2
nTPM
Monaco:
223.6
nTPM
Schmiedel:
177.9
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
155.2
HPA sample
nTPM
gdT-cell nTPM: 105.7
Samples: 6
Max nTPM: 131.1
Min nTPM: 63.1
P10809_1007
63.1
P10809_1022
126.6
P10809_1041
123.4
P10809_1060
131.1
P10809_1077
66.8
P10809_1098
123.4
MAIT T-cell nTPM: 109.1
Samples: 6
Max nTPM: 141.2
Min nTPM: 77.8
P10809_1006
77.8
P10809_1024
141.2
P10809_1043
131.4
P10809_1062
95.5
P10809_1083
92.7
P10809_1097
115.8
Memory CD4 T-cell nTPM: 112.2
Samples: 6
Max nTPM: 132.0
Min nTPM: 85.0
P10809_1014
85.0
P10809_1026
132.0
P10809_1045
124.3
P10809_1064
102.9
P10809_1086
105.2
P10809_1113
123.7
Memory CD8 T-cell nTPM: 116.6
Samples: 5
Max nTPM: 138.9
Min nTPM: 96.0
P10809_1012
96.0
P10809_1027
120.3
P10809_1046
138.9
P10809_1065
114.9
P10809_1111
113.1
Naive CD4 T-cell nTPM: 130.0
Samples: 6
Max nTPM: 209.4
Min nTPM: 82.3
P10809_1015
82.3
P10809_1030
137.7
P10809_1049
209.4
P10809_1068
109.8
P10809_1085
107.0
P10809_1112
133.7
Naive CD8 T-cell nTPM: 120.2
Samples: 6
Max nTPM: 157.2
Min nTPM: 89.6
P10809_1016
89.6
P10809_1031
157.2
P10809_1050
128.2
P10809_1069
114.4
P10809_1087
95.0
P10809_1110
136.9
T-reg nTPM: 155.2
Samples: 6
Max nTPM: 190.2
Min nTPM: 96.3
P10809_1018
136.4
P10809_1037
167.6
P10809_1056
190.2
P10809_1075
96.3
P10809_1094
155.5
P10809_1106
185.1
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
223.6
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 167.8
Samples: 4
Max nTPM: 191.2
Min nTPM: 116.8
RHH5202_R3573
191.2
RHH5230_R3602
185.3
RHH5259_R3631
116.8
RHH5288_R3660
178.0
Effector memory CD8 T-cell nTPM: 220.8
Samples: 4
Max nTPM: 253.5
Min nTPM: 162.5
RHH5203_R3574
230.9
RHH5231_R3603
253.5
RHH5260_R3632
162.5
RHH5289_R3661
236.3
MAIT T-cell nTPM: 184.3
Samples: 4
Max nTPM: 205.7
Min nTPM: 158.3
RHH5233_R3605
205.7
RHH5205_R3576
158.3
RHH5262_R3634
175.0
RHH5297_R3663
198.3
Memory CD4 T-cell TFH nTPM: 167.4
Samples: 4
Max nTPM: 209.4
Min nTPM: 136.1
RHH5300_R3666
136.1
RHH5236_R3608
209.4
RHH5265_R3637
159.7
RHH5208_R3579
164.2
Memory CD4 T-cell Th1 nTPM: 153.5
Samples: 4
Max nTPM: 190.6
Min nTPM: 107.4
RHH5210_R3581
190.6
RHH5302_R3668
168.1
RHH5238_R3610
107.4
RHH5267_R3639
147.7
Memory CD4 T-cell Th1/Th17 nTPM: 145.7
Samples: 4
Max nTPM: 187.9
Min nTPM: 97.2
RHH5303_R3669
187.9
RHH5211_R3582
173.3
RHH5239_R3611
97.2
RHH5268_R3640
124.5
Memory CD4 T-cell Th17 nTPM: 143.2
Samples: 4
Max nTPM: 163.0
Min nTPM: 121.1
RHH5304_R3670
147.4
RHH5212_R3583
163.0
RHH5240_R3612
141.2
RHH5269_R3641
121.1
Memory CD4 T-cell Th2 nTPM: 155.5
Samples: 4
Max nTPM: 171.8
Min nTPM: 137.9
RHH5305_R3671
167.8
RHH5213_R3584
171.8
RHH5241_R3613
144.4
RHH5270_R3642
137.9
Naive CD4 T-cell nTPM: 175.8
Samples: 4
Max nTPM: 202.8
Min nTPM: 136.9
RHH5306_R3672
200.1
RHH5214_R3585
202.8
RHH5242_R3614
163.4
RHH5271_R3643
136.9
Naive CD8 T-cell nTPM: 181.0
Samples: 4
Max nTPM: 233.7
Min nTPM: 94.3
RHH5201_R3572
233.7
RHH5229_R3601
94.3
RHH5258_R3630
204.9
RHH5287_R3659
191.2
Non-Vd2 gdTCR nTPM: 223.6
Samples: 4
Max nTPM: 250.5
Min nTPM: 193.0
RHH5235_R3607
207.9
RHH5264_R3636
243.1
RHH5207_R3578
250.5
RHH5299_R3665
193.0
T-reg nTPM: 182.7
Samples: 4
Max nTPM: 254.1
Min nTPM: 138.8
RHH5301_R3667
156.6
RHH5237_R3609
254.1
RHH5266_R3638
138.8
RHH5209_R3580
181.1
Terminal effector memory CD4 T-cell nTPM: 203.0
Samples: 2
Max nTPM: 207.4
Min nTPM: 198.5
RHH5243_R3615
207.4
RHH5272_R3644
198.5
Terminal effector memory CD8 T-cell nTPM: 212.4
Samples: 4
Max nTPM: 232.7
Min nTPM: 171.7
RHH5232_R3604
232.7
RHH5204_R3575
232.4
RHH5261_R3633
171.7
RHH5296_R3662
212.8
Vd2 gdTCR nTPM: 199.3
Samples: 4
Max nTPM: 249.2
Min nTPM: 170.2
RHH5234_R3606
200.4
RHH5206_R3577
249.2
RHH5263_R3635
177.2
RHH5298_R3664
170.2
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
The Human Protein Atlas project is funded
