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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
180.0
nTPM
Monaco:
151.3
nTPM
Schmiedel:
88.9
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
180.0
HPA sample
nTPM
gdT-cell nTPM: 124.5
Samples: 6
Max nTPM: 145.0
Min nTPM: 100.0
P10809_1007
100.0
P10809_1022
130.0
P10809_1041
145.0
P10809_1060
120.4
P10809_1077
140.9
P10809_1098
110.5
MAIT T-cell nTPM: 119.2
Samples: 6
Max nTPM: 138.4
Min nTPM: 96.3
P10809_1006
99.5
P10809_1024
138.4
P10809_1043
117.3
P10809_1062
134.9
P10809_1083
96.3
P10809_1097
128.8
Memory CD4 T-cell nTPM: 125.7
Samples: 6
Max nTPM: 140.9
Min nTPM: 100.7
P10809_1014
100.7
P10809_1026
139.3
P10809_1045
123.6
P10809_1064
140.9
P10809_1086
139.2
P10809_1113
110.6
Memory CD8 T-cell nTPM: 123.2
Samples: 5
Max nTPM: 156.4
Min nTPM: 90.0
P10809_1012
90.0
P10809_1027
116.2
P10809_1046
123.8
P10809_1065
156.4
P10809_1111
129.6
Naive CD4 T-cell nTPM: 127.2
Samples: 6
Max nTPM: 164.0
Min nTPM: 96.7
P10809_1015
96.7
P10809_1030
138.7
P10809_1049
164.0
P10809_1068
120.5
P10809_1085
127.5
P10809_1112
115.5
Naive CD8 T-cell nTPM: 131.0
Samples: 6
Max nTPM: 153.4
Min nTPM: 109.0
P10809_1016
109.0
P10809_1031
131.7
P10809_1050
130.1
P10809_1069
146.3
P10809_1087
153.4
P10809_1110
115.3
T-reg nTPM: 180.0
Samples: 6
Max nTPM: 222.5
Min nTPM: 132.2
P10809_1018
132.2
P10809_1037
173.2
P10809_1056
198.0
P10809_1075
170.4
P10809_1094
222.5
P10809_1106
183.6
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
151.3
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 95.4
Samples: 4
Max nTPM: 118.7
Min nTPM: 64.7
RHH5202_R3573
117.9
RHH5230_R3602
80.1
RHH5259_R3631
64.7
RHH5288_R3660
118.7
Effector memory CD8 T-cell nTPM: 128.9
Samples: 4
Max nTPM: 177.2
Min nTPM: 92.0
RHH5203_R3574
129.9
RHH5231_R3603
177.2
RHH5260_R3632
92.0
RHH5289_R3661
116.3
MAIT T-cell nTPM: 123.1
Samples: 4
Max nTPM: 155.5
Min nTPM: 70.3
RHH5233_R3605
126.4
RHH5205_R3576
70.3
RHH5262_R3634
140.2
RHH5297_R3663
155.5
Memory CD4 T-cell TFH nTPM: 141.4
Samples: 4
Max nTPM: 190.5
Min nTPM: 113.3
RHH5300_R3666
113.3
RHH5236_R3608
190.5
RHH5265_R3637
122.1
RHH5208_R3579
139.6
Memory CD4 T-cell Th1 nTPM: 103.0
Samples: 4
Max nTPM: 131.0
Min nTPM: 78.0
RHH5210_R3581
123.1
RHH5302_R3668
131.0
RHH5238_R3610
78.0
RHH5267_R3639
80.0
Memory CD4 T-cell Th1/Th17 nTPM: 119.2
Samples: 4
Max nTPM: 179.9
Min nTPM: 52.9
RHH5303_R3669
168.3
RHH5211_R3582
179.9
RHH5239_R3611
52.9
RHH5268_R3640
75.5
Memory CD4 T-cell Th17 nTPM: 89.0
Samples: 4
Max nTPM: 122.2
Min nTPM: 70.9
RHH5304_R3670
90.1
RHH5212_R3583
122.2
RHH5240_R3612
70.9
RHH5269_R3641
72.8
Memory CD4 T-cell Th2 nTPM: 107.4
Samples: 4
Max nTPM: 119.6
Min nTPM: 95.0
RHH5305_R3671
117.3
RHH5213_R3584
95.0
RHH5241_R3613
119.6
RHH5270_R3642
97.5
Naive CD4 T-cell nTPM: 126.9
Samples: 4
Max nTPM: 158.6
Min nTPM: 79.6
RHH5306_R3672
130.7
RHH5214_R3585
158.6
RHH5242_R3614
79.6
RHH5271_R3643
138.7
Naive CD8 T-cell nTPM: 101.9
Samples: 4
Max nTPM: 135.1
Min nTPM: 71.4
RHH5201_R3572
122.0
RHH5229_R3601
71.4
RHH5258_R3630
135.1
RHH5287_R3659
79.0
Non-Vd2 gdTCR nTPM: 137.9
Samples: 4
Max nTPM: 194.5
Min nTPM: 60.9
RHH5235_R3607
60.9
RHH5264_R3636
194.5
RHH5207_R3578
125.2
RHH5299_R3665
171.0
T-reg nTPM: 121.8
Samples: 4
Max nTPM: 181.2
Min nTPM: 81.9
RHH5301_R3667
118.9
RHH5237_R3609
181.2
RHH5266_R3638
81.9
RHH5209_R3580
105.3
Terminal effector memory CD4 T-cell nTPM: 111.2
Samples: 2
Max nTPM: 148.0
Min nTPM: 74.4
RHH5243_R3615
74.4
RHH5272_R3644
148.0
Terminal effector memory CD8 T-cell nTPM: 151.3
Samples: 4
Max nTPM: 166.0
Min nTPM: 130.4
RHH5232_R3604
146.0
RHH5204_R3575
166.0
RHH5261_R3633
130.4
RHH5296_R3662
162.8
Vd2 gdTCR nTPM: 147.5
Samples: 4
Max nTPM: 203.8
Min nTPM: 113.8
RHH5234_R3606
113.8
RHH5206_R3577
203.8
RHH5263_R3635
119.9
RHH5298_R3664
152.3
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
The Human Protein Atlas project is funded
