MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:6.6 nTPM
HPA Brain:15.0 nTPM
GTEx:6.6 nTPM
FANTOM5:23.8 Scaled Tags Per Million
Pig:29.9 nTPM
Mouse:14.2 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 15.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 12.6
2019 Male, age 18, unknown 16.1
1830 Male, age 51, unknown 14.5
2411 Female, age 72, unknown 14.1
1870 Female, age 42, unknown 13.9
1827 Male, age 72, unknown 12.7
1833 Male, age 53, unknown 12.7
2219 Male, age 76, both hemispheres 12.0
2828 Female, age 72, unknown 11.6
2666 Male, age 74, left hemisphere 9.7
2586 Male, age 75, left hemisphere 8.7
Dorsal raphe nucleus
nTPM: 14.1
2298 Female, age 72, unknown 15.7
2750 Male, age 76, both hemispheres 15.7
2016 Female, age 72, unknown 14.1
1828 Male, age 53, unknown 13.8
2047 Male, age 72, unknown 11.2
Inferior colliculus
nTPM: 12.6
2097 Female, age 72, unknown 14.1
1890 Male, age 53, unknown 12.8
1848 Female, age 42, unknown 11.9
2849 Male, age 72, unknown 11.5
Median raphe nucleus
nTPM: 15.0
2220 Male, age 76, midline 15.0
Periaquaductal grey, anterior
nTPM: 14.2
1947 Male, age 18, unknown 15.9
2502 Female, age 75, unknown 15.1
1795 Male, age 51, unknown 11.5
Periaquaductal grey, dorsal
nTPM: 12.8
2464 Female, age 72, unknown 13.3
2850 Male, age 76, both hemispheres 13.1
1831 Male, age 72, unknown 12.7
1840 Male, age 53, unknown 12.1
Periaquaductal grey, lateral
nTPM: 13.8
2272 Male, age 74, both hemispheres 16.3
2140 Male, age 76, both hemispheres 13.3
2053 Male, age 18, unknown 11.7
Pretectal area
nTPM: 14.3
2273 Male, age 74, both hemispheres 18.2
2007 Male, age 72, unknown 15.4
1944 Female, age 72, unknown 15.1
2667 Female, age 75, unknown 15.0
1817 Female, age 42, unknown 14.9
2224 Female, age 72, unknown 14.5
1816 Male, age 51, unknown 14.4
1815 Male, age 53, unknown 14.3
2316 Male, age 76, right hemisphere 12.6
2825 Male, age 18, unknown 11.8
2407 Male, age 75, both hemispheres 10.9
Red nucleus
nTPM: 14.0
1904 Male, age 53, unknown 16.3
1954 Female, age 42, unknown 15.7
1821 Female, age 72, unknown 15.6
2503 Female, age 72, unknown 15.3
2227 Male, age 72, unknown 15.2
1865 Male, age 51, unknown 15.1
2785 Male, age 18, unknown 14.2
2823 Male, age 76, right hemisphere 14.2
2769 Male, age 72, unknown 13.3
2725 Female, age 75, unknown 12.2
2588 Male, age 74, left hemisphere 10.5
2584 Male, age 75, left hemisphere 9.9
Substantia nigra
nTPM: 13.5
2409 Female, age 72, unknown 17.6
1889 Female, age 72, unknown 14.6
1851 Male, age 51, unknown 14.2
1916 Female, age 42, unknown 14.2
2241 Male, age 72, unknown 14.0
2590 Female, age 75, unknown 13.7
1941 Male, age 53, unknown 13.0
2699 Male, age 18, unknown 11.6
2583 Male, age 75, right hemisphere 11.4
2665 Male, age 74, both hemispheres 10.8
Superior colliculus
nTPM: 13.6
2587 Male, age 74, left hemisphere 16.3
1895 Male, age 76, right hemisphere 15.1
1995 Male, age 72, unknown 14.9
1913 Female, age 42, unknown 14.6
2261 Male, age 18, unknown 14.3
2668 Female, age 75, unknown 13.1
1839 Male, age 51, unknown 12.9
1796 Male, age 53, unknown 12.8
2087 Female, age 72, unknown 11.9
2664 Male, age 75, both hemispheres 9.6
Ventral tegmental area
nTPM: 13.2
2410 Female, age 72, unknown 14.2
2223 Female, age 72, unknown 13.9
2218 Male, age 76, both hemispheres 13.7
1915 Female, age 42, unknown 13.0
2021 Male, age 53, unknown 12.3
1942 Male, age 51, unknown 12.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 6.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 6.6
Samples: 139

Max nTPM: 10.2
Min nTPM: 4.1
Std nTPM: 1.2
Median nTPM: 6.5
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 10.2
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 10.0
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 9.8
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 9.7
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 9.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 9.5
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 9.1
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 9.1
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 9.0
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 8.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 8.6
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 23.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 23.8
FF:10158-103A5 76 years, female 23.8

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 29.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 27.0
Samples: 4

Max nTPM: 30.0
Min nTPM: 22.6
Sample A Female 30.0
Sample B Female 25.6
Sample C Male 29.6
Sample D Male 22.6
Midbrain
nTPM: 29.7
Samples: 4

Max nTPM: 36.0
Min nTPM: 22.9
Sample A Female 22.9
Sample B Female 28.6
Sample C Male 36.0
Sample D Male 31.3
Periaqueductal gray
nTPM: 26.1
Samples: 3

Max nTPM: 29.0
Min nTPM: 23.9
Sample B Female 25.5
Sample C Male 29.0
Sample D Male 23.9
Superior colliculi
nTPM: 29.9
Samples: 4

Max nTPM: 32.4
Min nTPM: 28.7
Sample A Female 29.1
Sample B Female 29.5
Sample C Male 32.4
Sample D Male 28.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 14.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 14.3
Samples: 4

Max nTPM: 16.2
Min nTPM: 12.9
Sample A Male 12.9
Sample B Male 16.2
Sample C Female 14.8
Sample D Female 13.1

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org