MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:14.2 nTPM
HPA Brain:16.1 nTPM
GTEx:14.2 nTPM
FANTOM5:102.0 Scaled Tags Per Million
Pig:34.4 nTPM
Mouse:34.8 nTPM
Allen mouse:2.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 16.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 14.4
1870 Female, age 42, unknown 18.0
2411 Female, age 72, unknown 16.3
1833 Male, age 53, unknown 14.7
2586 Male, age 75, left hemisphere 14.6
2019 Male, age 18, unknown 14.4
1830 Male, age 51, unknown 14.3
2828 Female, age 72, unknown 13.8
2666 Male, age 74, left hemisphere 13.1
2219 Male, age 76, both hemispheres 13.0
1827 Male, age 72, unknown 12.3
Dorsal raphe nucleus
nTPM: 14.7
2750 Male, age 76, both hemispheres 16.1
1828 Male, age 53, unknown 14.9
2016 Female, age 72, unknown 14.3
2047 Male, age 72, unknown 14.3
2298 Female, age 72, unknown 14.0
Inferior colliculus
nTPM: 13.6
2849 Male, age 72, unknown 14.7
1848 Female, age 42, unknown 13.6
2097 Female, age 72, unknown 13.1
1890 Male, age 53, unknown 13.0
Median raphe nucleus
nTPM: 16.1
2220 Male, age 76, midline 16.1
Periaquaductal grey, anterior
nTPM: 13.1
1947 Male, age 18, unknown 13.8
2502 Female, age 75, unknown 12.9
1795 Male, age 51, unknown 12.5
Periaquaductal grey, dorsal
nTPM: 14.9
2850 Male, age 76, both hemispheres 17.0
1840 Male, age 53, unknown 16.5
2464 Female, age 72, unknown 13.6
1831 Male, age 72, unknown 12.5
Periaquaductal grey, lateral
nTPM: 14.5
2140 Male, age 76, both hemispheres 16.5
2053 Male, age 18, unknown 14.8
2272 Male, age 74, both hemispheres 12.4
Pretectal area
nTPM: 13.3
2224 Female, age 72, unknown 15.9
2825 Male, age 18, unknown 15.2
1817 Female, age 42, unknown 15.0
2667 Female, age 75, unknown 14.0
1815 Male, age 53, unknown 13.8
2007 Male, age 72, unknown 12.8
2407 Male, age 75, both hemispheres 12.5
1816 Male, age 51, unknown 12.4
2273 Male, age 74, both hemispheres 12.3
2316 Male, age 76, right hemisphere 11.9
1944 Female, age 72, unknown 10.3
Red nucleus
nTPM: 15.4
1954 Female, age 42, unknown 17.3
1821 Female, age 72, unknown 16.8
1904 Male, age 53, unknown 16.7
2769 Male, age 72, unknown 16.6
2227 Male, age 72, unknown 16.5
1865 Male, age 51, unknown 16.2
2503 Female, age 72, unknown 15.9
2725 Female, age 75, unknown 15.9
2588 Male, age 74, left hemisphere 13.8
2823 Male, age 76, right hemisphere 13.4
2584 Male, age 75, left hemisphere 12.7
2785 Male, age 18, unknown 12.6
Substantia nigra
nTPM: 14.1
2699 Male, age 18, unknown 15.4
1851 Male, age 51, unknown 15.3
2241 Male, age 72, unknown 14.9
1916 Female, age 42, unknown 14.5
2665 Male, age 74, both hemispheres 14.5
2583 Male, age 75, right hemisphere 14.1
1889 Female, age 72, unknown 13.7
2409 Female, age 72, unknown 13.5
2590 Female, age 75, unknown 13.5
1941 Male, age 53, unknown 11.6
Superior colliculus
nTPM: 13.6
1913 Female, age 42, unknown 18.4
1995 Male, age 72, unknown 14.7
2587 Male, age 74, left hemisphere 14.3
1839 Male, age 51, unknown 14.0
2664 Male, age 75, both hemispheres 13.7
2668 Female, age 75, unknown 12.9
1895 Male, age 76, right hemisphere 12.7
2261 Male, age 18, unknown 12.0
1796 Male, age 53, unknown 11.8
2087 Female, age 72, unknown 11.4
Ventral tegmental area
nTPM: 14.6
2223 Female, age 72, unknown 16.7
2021 Male, age 53, unknown 15.8
1915 Female, age 42, unknown 14.0
2410 Female, age 72, unknown 14.0
1942 Male, age 51, unknown 13.5
2218 Male, age 76, both hemispheres 13.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 14.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 14.2
Samples: 139

Max nTPM: 30.7
Min nTPM: 8.9
Std nTPM: 3.4
Median nTPM: 13.7
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 30.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 25.7
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 25.4
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 22.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 22.0
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 21.7
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 21.2
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 19.8
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 19.4
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 19.4
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 19.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 102.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 102.0
FF:10158-103A5 76 years, female 102.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 34.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 32.7
Samples: 4

Max nTPM: 39.5
Min nTPM: 26.2
Sample A Female 39.5
Sample B Female 33.1
Sample C Male 31.9
Sample D Male 26.2
Midbrain
nTPM: 31.6
Samples: 4

Max nTPM: 38.9
Min nTPM: 25.8
Sample A Female 38.9
Sample B Female 31.0
Sample C Male 30.7
Sample D Male 25.8
Periaqueductal gray
nTPM: 33.1
Samples: 3

Max nTPM: 36.1
Min nTPM: 30.3
Sample B Female 30.3
Sample C Male 36.1
Sample D Male 32.8
Superior colliculi
nTPM: 34.4
Samples: 4

Max nTPM: 45.3
Min nTPM: 27.3
Sample A Female 36.2
Sample B Female 45.3
Sample C Male 27.3
Sample D Male 28.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 34.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 34.8
Samples: 4

Max nTPM: 38.8
Min nTPM: 30.3
Sample A Male 36.5
Sample B Male 38.8
Sample C Female 33.7
Sample D Female 30.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 2.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.7
72081556 Antisense, RP_051017_01_D09, Mouse strain C57BL/6J (56 days, male) 3.7
69015464 Antisense, RP_050315_01_A08, Mouse strain C57BL/6J (56 days, male) 1.7

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