MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:28.3 nTPM
HPA Brain:104.0 nTPM
GTEx:28.3 nTPM
FANTOM5:323.4 Scaled Tags Per Million
Pig:94.0 nTPM
Mouse:49.3 nTPM
Allen mouse:12.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 104.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 93.1
2219 Male, age 76, both hemispheres 113.5
2828 Female, age 72, unknown 99.4
1833 Male, age 53, unknown 96.8
1830 Male, age 51, unknown 95.4
1870 Female, age 42, unknown 91.8
1827 Male, age 72, unknown 91.3
2586 Male, age 75, left hemisphere 89.7
2666 Male, age 74, left hemisphere 85.6
2019 Male, age 18, unknown 84.0
2411 Female, age 72, unknown 83.1
Dorsal raphe nucleus
nTPM: 85.1
2750 Male, age 76, both hemispheres 96.6
2016 Female, age 72, unknown 86.3
1828 Male, age 53, unknown 85.0
2047 Male, age 72, unknown 79.1
2298 Female, age 72, unknown 78.7
Inferior colliculus
nTPM: 88.9
2849 Male, age 72, unknown 104.1
1890 Male, age 53, unknown 90.8
1848 Female, age 42, unknown 86.5
2097 Female, age 72, unknown 74.3
Median raphe nucleus
nTPM: 104.0
2220 Male, age 76, midline 104.0
Periaquaductal grey, anterior
nTPM: 83.7
1947 Male, age 18, unknown 89.2
1795 Male, age 51, unknown 84.1
2502 Female, age 75, unknown 77.9
Periaquaductal grey, dorsal
nTPM: 93.0
2850 Male, age 76, both hemispheres 110.0
1831 Male, age 72, unknown 92.6
1840 Male, age 53, unknown 87.5
2464 Female, age 72, unknown 82.0
Periaquaductal grey, lateral
nTPM: 89.2
2140 Male, age 76, both hemispheres 94.0
2272 Male, age 74, both hemispheres 86.9
2053 Male, age 18, unknown 86.8
Pretectal area
nTPM: 91.7
2667 Female, age 75, unknown 107.0
2316 Male, age 76, right hemisphere 96.7
2407 Male, age 75, both hemispheres 95.4
1815 Male, age 53, unknown 93.4
2224 Female, age 72, unknown 90.4
2825 Male, age 18, unknown 90.3
1816 Male, age 51, unknown 90.2
1817 Female, age 42, unknown 88.5
2007 Male, age 72, unknown 87.4
1944 Female, age 72, unknown 87.1
2273 Male, age 74, both hemispheres 82.4
Red nucleus
nTPM: 96.0
2823 Male, age 76, right hemisphere 113.1
2725 Female, age 75, unknown 102.0
1865 Male, age 51, unknown 99.0
1904 Male, age 53, unknown 98.1
2503 Female, age 72, unknown 97.5
2584 Male, age 75, left hemisphere 95.4
2769 Male, age 72, unknown 95.1
1954 Female, age 42, unknown 93.5
2227 Male, age 72, unknown 93.1
2785 Male, age 18, unknown 90.8
2588 Male, age 74, left hemisphere 88.9
1821 Female, age 72, unknown 85.4
Substantia nigra
nTPM: 88.4
2699 Male, age 18, unknown 102.4
2665 Male, age 74, both hemispheres 98.1
2583 Male, age 75, right hemisphere 93.2
2590 Female, age 75, unknown 90.2
1889 Female, age 72, unknown 85.6
1941 Male, age 53, unknown 85.4
1916 Female, age 42, unknown 83.7
1851 Male, age 51, unknown 83.5
2241 Male, age 72, unknown 81.1
2409 Female, age 72, unknown 80.8
Superior colliculus
nTPM: 89.5
1913 Female, age 42, unknown 106.4
1995 Male, age 72, unknown 97.0
1895 Male, age 76, right hemisphere 91.0
2087 Female, age 72, unknown 89.1
1839 Male, age 51, unknown 89.0
2664 Male, age 75, both hemispheres 87.7
1796 Male, age 53, unknown 87.4
2261 Male, age 18, unknown 87.2
2587 Male, age 74, left hemisphere 85.3
2668 Female, age 75, unknown 75.0
Ventral tegmental area
nTPM: 87.1
2218 Male, age 76, both hemispheres 98.0
2223 Female, age 72, unknown 94.3
1942 Male, age 51, unknown 87.0
2021 Male, age 53, unknown 85.8
1915 Female, age 42, unknown 84.2
2410 Female, age 72, unknown 73.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 28.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 28.3
Samples: 139

Max nTPM: 51.8
Min nTPM: 13.0
Std nTPM: 6.6
Median nTPM: 27.6
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 51.8
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 51.5
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 46.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 41.9
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 40.8
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 40.8
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 40.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 39.6
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 39.0
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 38.5
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 38.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 323.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 323.4
FF:10158-103A5 76 years, female 323.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 94.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 84.1
Samples: 4

Max nTPM: 103.6
Min nTPM: 70.7
Sample A Female 76.0
Sample B Female 85.9
Sample C Male 70.7
Sample D Male 103.6
Midbrain
nTPM: 94.0
Samples: 4

Max nTPM: 119.6
Min nTPM: 81.5
Sample A Female 119.6
Sample B Female 89.2
Sample C Male 81.5
Sample D Male 85.8
Periaqueductal gray
nTPM: 90.5
Samples: 3

Max nTPM: 98.1
Min nTPM: 84.5
Sample B Female 98.1
Sample C Male 84.5
Sample D Male 89.0
Superior colliculi
nTPM: 84.0
Samples: 4

Max nTPM: 86.9
Min nTPM: 80.6
Sample A Female 82.5
Sample B Female 86.9
Sample C Male 80.6
Sample D Male 86.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 49.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 49.3
Samples: 4

Max nTPM: 57.7
Min nTPM: 43.9
Sample A Male 43.9
Sample B Male 45.8
Sample C Female 57.7
Sample D Female 49.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 12.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 12.3
69873624 Antisense, RP_050512_01_F05, Mouse strain C57BL/6J (56 days, male) 12.3

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