MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:68.2 nTPM
HPA Brain:49.9 nTPM
GTEx:68.2 nTPM
FANTOM5:107.0 Scaled Tags Per Million
Pig:86.4 nTPM
Mouse:73.0 nTPM
Allen mouse:0.7 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 49.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 40.8
1870 Female, age 42, unknown 53.6
1830 Male, age 51, unknown 48.9
1833 Male, age 53, unknown 48.4
2411 Female, age 72, unknown 47.6
2019 Male, age 18, unknown 45.6
2666 Male, age 74, left hemisphere 39.7
2219 Male, age 76, both hemispheres 32.8
1827 Male, age 72, unknown 31.9
2586 Male, age 75, left hemisphere 29.9
2828 Female, age 72, unknown 29.6
Dorsal raphe nucleus
nTPM: 38.9
2750 Male, age 76, both hemispheres 48.0
2016 Female, age 72, unknown 41.7
1828 Male, age 53, unknown 37.5
2298 Female, age 72, unknown 36.8
2047 Male, age 72, unknown 30.7
Inferior colliculus
nTPM: 38.4
2097 Female, age 72, unknown 42.6
1890 Male, age 53, unknown 41.4
1848 Female, age 42, unknown 37.0
2849 Male, age 72, unknown 32.6
Median raphe nucleus
nTPM: 35.2
2220 Male, age 76, midline 35.2
Periaquaductal grey, anterior
nTPM: 34.3
2502 Female, age 75, unknown 42.2
1947 Male, age 18, unknown 34.7
1795 Male, age 51, unknown 26.0
Periaquaductal grey, dorsal
nTPM: 34.8
2464 Female, age 72, unknown 38.7
2850 Male, age 76, both hemispheres 36.0
1831 Male, age 72, unknown 35.7
1840 Male, age 53, unknown 28.8
Periaquaductal grey, lateral
nTPM: 30.7
2053 Male, age 18, unknown 33.8
2272 Male, age 74, both hemispheres 30.6
2140 Male, age 76, both hemispheres 27.8
Pretectal area
nTPM: 34.8
1815 Male, age 53, unknown 43.8
2316 Male, age 76, right hemisphere 40.2
1817 Female, age 42, unknown 38.9
2007 Male, age 72, unknown 37.0
2224 Female, age 72, unknown 34.6
1944 Female, age 72, unknown 34.2
2825 Male, age 18, unknown 32.3
2667 Female, age 75, unknown 31.8
2273 Male, age 74, both hemispheres 31.1
1816 Male, age 51, unknown 30.2
2407 Male, age 75, both hemispheres 28.2
Red nucleus
nTPM: 49.9
1821 Female, age 72, unknown 66.6
1865 Male, age 51, unknown 61.7
1904 Male, age 53, unknown 61.5
1954 Female, age 42, unknown 58.2
2503 Female, age 72, unknown 53.1
2823 Male, age 76, right hemisphere 50.4
2227 Male, age 72, unknown 49.6
2769 Male, age 72, unknown 48.5
2785 Male, age 18, unknown 45.9
2725 Female, age 75, unknown 39.0
2584 Male, age 75, left hemisphere 32.7
2588 Male, age 74, left hemisphere 31.8
Substantia nigra
nTPM: 39.2
2241 Male, age 72, unknown 48.2
2409 Female, age 72, unknown 43.7
1889 Female, age 72, unknown 41.3
2665 Male, age 74, both hemispheres 40.8
1851 Male, age 51, unknown 40.5
2699 Male, age 18, unknown 39.6
2590 Female, age 75, unknown 37.1
2583 Male, age 75, right hemisphere 34.3
1916 Female, age 42, unknown 33.6
1941 Male, age 53, unknown 32.6
Superior colliculus
nTPM: 39.2
1913 Female, age 42, unknown 52.9
1995 Male, age 72, unknown 50.6
2668 Female, age 75, unknown 43.5
1895 Male, age 76, right hemisphere 43.2
1839 Male, age 51, unknown 38.5
2587 Male, age 74, left hemisphere 38.4
2087 Female, age 72, unknown 33.3
2261 Male, age 18, unknown 32.9
1796 Male, age 53, unknown 30.7
2664 Male, age 75, both hemispheres 28.1
Ventral tegmental area
nTPM: 38.3
2223 Female, age 72, unknown 48.1
2410 Female, age 72, unknown 42.3
1915 Female, age 42, unknown 37.5
1942 Male, age 51, unknown 34.6
2218 Male, age 76, both hemispheres 34.3
2021 Male, age 53, unknown 33.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 68.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 68.2
Samples: 139

Max nTPM: 151.3
Min nTPM: 33.0
Std nTPM: 21.6
Median nTPM: 62.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 151.3
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 128.3
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 119.9
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 115.6
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 114.7
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 111.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 107.6
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 105.9
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 105.9
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 104.2
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 104.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 107.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 107.0
FF:10158-103A5 76 years, female 107.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 86.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 85.8
Samples: 4

Max nTPM: 105.2
Min nTPM: 77.1
Sample A Female 83.4
Sample B Female 77.1
Sample C Male 77.5
Sample D Male 105.2
Midbrain
nTPM: 86.4
Samples: 4

Max nTPM: 132.4
Min nTPM: 61.9
Sample A Female 132.4
Sample B Female 87.4
Sample C Male 61.9
Sample D Male 63.9
Periaqueductal gray
nTPM: 70.0
Samples: 3

Max nTPM: 73.5
Min nTPM: 65.5
Sample B Female 70.9
Sample C Male 65.5
Sample D Male 73.5
Superior colliculi
nTPM: 67.0
Samples: 4

Max nTPM: 80.6
Min nTPM: 45.9
Sample A Female 66.3
Sample B Female 45.9
Sample C Male 75.1
Sample D Male 80.6

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 73.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 73.0
Samples: 4

Max nTPM: 76.8
Min nTPM: 68.7
Sample A Male 76.8
Sample B Male 74.2
Sample C Female 68.7
Sample D Female 72.4

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.7
75831752 Antisense, RP_060601_02_D01, Mouse strain C57BL/6J (56 days, male) 0.7

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