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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
46.6
nTPM
HPA Brain:
31.6
nTPM
GTEx:
46.6
nTPM
FANTOM5:
75.1
Scaled Tags Per Million
Pig:
59.3
nTPM
Mouse:
22.4
nTPM
Allen mouse:
2.5
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
31.6
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 27.9
2666
Male, age 74, left hemisphere
31.3
1827
Male, age 72, unknown
30.8
1870
Female, age 42, unknown
30.6
2828
Female, age 72, unknown
29.6
1830
Male, age 51, unknown
27.7
2586
Male, age 75, left hemisphere
27.7
2019
Male, age 18, unknown
26.0
1833
Male, age 53, unknown
25.9
2411
Female, age 72, unknown
25.4
2219
Male, age 76, both hemispheres
23.9
Dorsal raphe nucleus nTPM: 25.5
2016
Female, age 72, unknown
27.1
1828
Male, age 53, unknown
26.7
2750
Male, age 76, both hemispheres
26.0
2298
Female, age 72, unknown
24.9
2047
Male, age 72, unknown
22.6
Inferior colliculus nTPM: 26.9
2849
Male, age 72, unknown
29.9
2097
Female, age 72, unknown
26.8
1848
Female, age 42, unknown
25.4
1890
Male, age 53, unknown
25.3
Median raphe nucleus nTPM: 30.1
2220
Male, age 76, midline
30.1
Periaquaductal grey, anterior nTPM: 31.2
2502
Female, age 75, unknown
33.1
1795
Male, age 51, unknown
30.6
1947
Male, age 18, unknown
30.0
Periaquaductal grey, dorsal nTPM: 27.6
2850
Male, age 76, both hemispheres
34.2
1831
Male, age 72, unknown
27.1
1840
Male, age 53, unknown
26.8
2464
Female, age 72, unknown
22.5
Periaquaductal grey, lateral nTPM: 27.4
2140
Male, age 76, both hemispheres
33.2
2053
Male, age 18, unknown
25.1
2272
Male, age 74, both hemispheres
24.1
Pretectal area nTPM: 29.0
2316
Male, age 76, right hemisphere
33.9
1816
Male, age 51, unknown
33.2
2007
Male, age 72, unknown
31.7
1815
Male, age 53, unknown
30.5
1817
Female, age 42, unknown
29.8
2825
Male, age 18, unknown
28.8
2224
Female, age 72, unknown
28.4
2407
Male, age 75, both hemispheres
26.6
1944
Female, age 72, unknown
25.8
2667
Female, age 75, unknown
25.4
2273
Male, age 74, both hemispheres
25.2
Red nucleus nTPM: 31.6
2503
Female, age 72, unknown
37.9
2725
Female, age 75, unknown
37.2
1821
Female, age 72, unknown
33.2
2588
Male, age 74, left hemisphere
32.5
1954
Female, age 42, unknown
32.3
1904
Male, age 53, unknown
31.1
2785
Male, age 18, unknown
31.1
1865
Male, age 51, unknown
30.4
2227
Male, age 72, unknown
30.0
2823
Male, age 76, right hemisphere
29.2
2769
Male, age 72, unknown
28.4
2584
Male, age 75, left hemisphere
25.3
Substantia nigra nTPM: 27.9
2699
Male, age 18, unknown
31.7
1916
Female, age 42, unknown
30.8
2665
Male, age 74, both hemispheres
30.3
1889
Female, age 72, unknown
29.0
2590
Female, age 75, unknown
28.4
2409
Female, age 72, unknown
28.3
1851
Male, age 51, unknown
27.6
1941
Male, age 53, unknown
25.8
2241
Male, age 72, unknown
25.0
2583
Male, age 75, right hemisphere
22.5
Superior colliculus nTPM: 28.9
1796
Male, age 53, unknown
31.8
1995
Male, age 72, unknown
31.0
1913
Female, age 42, unknown
30.8
2261
Male, age 18, unknown
30.7
2087
Female, age 72, unknown
29.3
2587
Male, age 74, left hemisphere
28.0
1895
Male, age 76, right hemisphere
27.8
1839
Male, age 51, unknown
27.4
2664
Male, age 75, both hemispheres
26.8
2668
Female, age 75, unknown
25.6
Ventral tegmental area nTPM: 27.7
2218
Male, age 76, both hemispheres
31.2
2021
Male, age 53, unknown
28.6
1915
Female, age 42, unknown
27.5
2223
Female, age 72, unknown
27.3
1942
Male, age 51, unknown
26.9
2410
Female, age 72, unknown
24.6
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
46.6
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 46.6
Samples: 139
Max nTPM: 77.8
Min nTPM: 22.4
Std nTPM: 8.0
Median nTPM: 46.1
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
77.8
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
73.7
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
65.8
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
65.2
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
64.2
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
64.2
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
63.2
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
63.0
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
61.1
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
60.7
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
60.4
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
59.5
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
59.5
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
56.2
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
55.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
55.7
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
55.6
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
55.5
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
55.3
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
54.8
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
53.8
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
53.2
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
52.0
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
51.9
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
51.7
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
51.6
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
50.8
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
50.7
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
50.7
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
50.5
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
50.4
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
50.2
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
49.6
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
49.6
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
49.5
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
49.4
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
49.3
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
49.1
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
49.1
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
49.0
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
49.0
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
48.9
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
48.8
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
48.8
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
48.8
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
48.8
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
48.6
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
48.6
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
48.6
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
48.3
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
48.3
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
48.1
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
47.6
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
47.6
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
47.5
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
47.5
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
47.1
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
47.0
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
47.0
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
47.0
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
46.9
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
46.8
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
46.7
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
46.6
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
46.6
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
46.5
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
46.2
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
46.2
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
46.1
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
46.1
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
45.9
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
45.8
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
45.5
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
45.5
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
45.3
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
45.2
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
45.2
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
45.2
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
45.0
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
45.0
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
44.9
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
44.9
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
44.8
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
44.8
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
44.8
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
44.4
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
44.2
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
44.1
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
43.8
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
43.3
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
43.2
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
43.0
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
42.9
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
42.7
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
42.4
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
42.2
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
42.2
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
42.0
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
41.4
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
41.3
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
41.3
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
41.1
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
41.0
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
40.9
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
40.9
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
40.8
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
40.7
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
40.5
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
40.4
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
40.4
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
40.4
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
40.3
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
40.2
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
40.0
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
40.0
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
39.9
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
39.9
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
39.8
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
39.5
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
39.4
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
39.2
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
39.2
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
38.8
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
38.4
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
38.3
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
38.2
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
37.9
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
37.5
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
37.4
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
37.3
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
36.6
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
36.6
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
35.6
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
34.8
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
34.5
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
33.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
33.1
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
32.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
22.4
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
22.4
Mouse sample
Sample description
nTPM
Midbrain nTPM: 22.5
Samples: 4
Max nTPM: 24.7
Min nTPM: 20.9
Sample A
Male
24.7
Sample B
Male
20.9
Sample C
Female
22.2
Sample D
Female
22.0
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.