MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:21.8 nTPM
HPA Brain:31.3 nTPM
GTEx:21.8 nTPM
FANTOM5:69.2 Scaled Tags Per Million
Pig:32.2 nTPM
Mouse:7.7 nTPM
Allen mouse:3.5 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 31.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 28.6
1830 Male, age 51, unknown 35.5
1870 Female, age 42, unknown 33.4
2411 Female, age 72, unknown 33.3
1833 Male, age 53, unknown 31.0
1827 Male, age 72, unknown 29.8
2219 Male, age 76, both hemispheres 27.8
2019 Male, age 18, unknown 27.7
2828 Female, age 72, unknown 26.8
2666 Male, age 74, left hemisphere 21.6
2586 Male, age 75, left hemisphere 19.5
Dorsal raphe nucleus
nTPM: 25.8
2750 Male, age 76, both hemispheres 30.6
2016 Female, age 72, unknown 29.8
1828 Male, age 53, unknown 25.1
2298 Female, age 72, unknown 22.1
2047 Male, age 72, unknown 21.3
Inferior colliculus
nTPM: 28.1
1890 Male, age 53, unknown 29.6
1848 Female, age 42, unknown 28.4
2097 Female, age 72, unknown 27.4
2849 Male, age 72, unknown 27.1
Median raphe nucleus
nTPM: 26.7
2220 Male, age 76, midline 26.7
Periaquaductal grey, anterior
nTPM: 26.2
1947 Male, age 18, unknown 27.9
2502 Female, age 75, unknown 26.3
1795 Male, age 51, unknown 24.4
Periaquaductal grey, dorsal
nTPM: 29.4
1831 Male, age 72, unknown 32.1
2464 Female, age 72, unknown 29.6
2850 Male, age 76, both hemispheres 28.3
1840 Male, age 53, unknown 27.5
Periaquaductal grey, lateral
nTPM: 28.4
2053 Male, age 18, unknown 30.4
2140 Male, age 76, both hemispheres 28.0
2272 Male, age 74, both hemispheres 27.0
Pretectal area
nTPM: 27.5
2316 Male, age 76, right hemisphere 31.7
2667 Female, age 75, unknown 31.3
2407 Male, age 75, both hemispheres 29.9
2825 Male, age 18, unknown 29.6
2224 Female, age 72, unknown 29.2
1815 Male, age 53, unknown 28.5
2273 Male, age 74, both hemispheres 27.4
1944 Female, age 72, unknown 25.1
2007 Male, age 72, unknown 24.3
1817 Female, age 42, unknown 23.0
1816 Male, age 51, unknown 22.8
Red nucleus
nTPM: 31.3
1865 Male, age 51, unknown 35.7
2503 Female, age 72, unknown 35.3
1904 Male, age 53, unknown 34.7
2227 Male, age 72, unknown 34.3
2823 Male, age 76, right hemisphere 32.0
1821 Female, age 72, unknown 31.9
1954 Female, age 42, unknown 31.8
2588 Male, age 74, left hemisphere 31.6
2769 Male, age 72, unknown 29.0
2725 Female, age 75, unknown 26.8
2584 Male, age 75, left hemisphere 26.4
2785 Male, age 18, unknown 26.2
Substantia nigra
nTPM: 25.9
2409 Female, age 72, unknown 34.7
2583 Male, age 75, right hemisphere 30.0
2590 Female, age 75, unknown 28.4
1889 Female, age 72, unknown 27.6
2699 Male, age 18, unknown 26.5
2241 Male, age 72, unknown 24.8
1941 Male, age 53, unknown 23.3
1851 Male, age 51, unknown 22.7
2665 Male, age 74, both hemispheres 22.2
1916 Female, age 42, unknown 18.6
Superior colliculus
nTPM: 29.2
1913 Female, age 42, unknown 38.8
1995 Male, age 72, unknown 35.1
1895 Male, age 76, right hemisphere 33.2
1839 Male, age 51, unknown 29.4
2087 Female, age 72, unknown 27.7
2261 Male, age 18, unknown 27.3
2668 Female, age 75, unknown 26.1
1796 Male, age 53, unknown 25.0
2587 Male, age 74, left hemisphere 24.8
2664 Male, age 75, both hemispheres 24.2
Ventral tegmental area
nTPM: 26.8
2410 Female, age 72, unknown 28.5
2223 Female, age 72, unknown 27.7
2021 Male, age 53, unknown 27.1
2218 Male, age 76, both hemispheres 27.0
1942 Male, age 51, unknown 26.3
1915 Female, age 42, unknown 24.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 21.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 21.8
Samples: 139

Max nTPM: 50.3
Min nTPM: 7.5
Std nTPM: 7.1
Median nTPM: 20.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 50.3
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 42.6
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 41.0
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 40.1
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 38.3
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 37.6
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 36.9
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 36.5
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 35.9
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 35.7
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 33.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 69.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 69.2
FF:10158-103A5 76 years, female 69.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 32.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 29.2
Samples: 4

Max nTPM: 34.3
Min nTPM: 23.8
Sample A Female 23.8
Sample B Female 30.5
Sample C Male 28.0
Sample D Male 34.3
Midbrain
nTPM: 30.3
Samples: 4

Max nTPM: 31.9
Min nTPM: 28.0
Sample A Female 31.9
Sample B Female 31.1
Sample C Male 28.0
Sample D Male 30.2
Periaqueductal gray
nTPM: 32.2
Samples: 3

Max nTPM: 34.4
Min nTPM: 30.0
Sample B Female 32.3
Sample C Male 30.0
Sample D Male 34.4
Superior colliculi
nTPM: 29.3
Samples: 4

Max nTPM: 37.1
Min nTPM: 25.5
Sample A Female 26.5
Sample B Female 37.1
Sample C Male 28.0
Sample D Male 25.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 7.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 7.7
Samples: 4

Max nTPM: 8.0
Min nTPM: 7.3
Sample A Male 7.7
Sample B Male 8.0
Sample C Female 7.8
Sample D Female 7.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 3.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.5
68160841 Antisense, RP_041122_01_B01, Mouse strain C57BL/6J (56 days, male) 3.5

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