MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:30.4 nTPM
HPA Brain:34.5 nTPM
GTEx:30.4 nTPM
FANTOM5:18.3 Scaled Tags Per Million
Pig:21.1 nTPM
Mouse:80.8 nTPM
Allen mouse:5.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 34.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 27.0
2586 Male, age 75, left hemisphere 47.3
2666 Male, age 74, left hemisphere 27.2
2828 Female, age 72, unknown 27.0
1827 Male, age 72, unknown 26.0
1870 Female, age 42, unknown 26.0
2019 Male, age 18, unknown 24.4
1830 Male, age 51, unknown 24.0
1833 Male, age 53, unknown 23.9
2411 Female, age 72, unknown 23.7
2219 Male, age 76, both hemispheres 20.3
Dorsal raphe nucleus
nTPM: 31.1
2016 Female, age 72, unknown 35.2
2298 Female, age 72, unknown 35.0
2047 Male, age 72, unknown 31.1
1828 Male, age 53, unknown 29.8
2750 Male, age 76, both hemispheres 24.1
Inferior colliculus
nTPM: 25.9
1890 Male, age 53, unknown 27.8
2097 Female, age 72, unknown 26.8
1848 Female, age 42, unknown 25.1
2849 Male, age 72, unknown 23.8
Median raphe nucleus
nTPM: 24.2
2220 Male, age 76, midline 24.2
Periaquaductal grey, anterior
nTPM: 29.4
2502 Female, age 75, unknown 31.1
1947 Male, age 18, unknown 28.6
1795 Male, age 51, unknown 28.5
Periaquaductal grey, dorsal
nTPM: 28.4
1840 Male, age 53, unknown 33.0
1831 Male, age 72, unknown 30.4
2850 Male, age 76, both hemispheres 25.2
2464 Female, age 72, unknown 25.1
Periaquaductal grey, lateral
nTPM: 26.5
2053 Male, age 18, unknown 30.9
2272 Male, age 74, both hemispheres 26.0
2140 Male, age 76, both hemispheres 22.7
Pretectal area
nTPM: 27.1
2224 Female, age 72, unknown 30.8
2407 Male, age 75, both hemispheres 30.0
2273 Male, age 74, both hemispheres 29.6
1815 Male, age 53, unknown 28.0
1816 Male, age 51, unknown 28.0
2667 Female, age 75, unknown 27.7
2825 Male, age 18, unknown 27.4
1817 Female, age 42, unknown 26.6
2007 Male, age 72, unknown 25.6
1944 Female, age 72, unknown 24.9
2316 Male, age 76, right hemisphere 19.5
Red nucleus
nTPM: 25.4
2584 Male, age 75, left hemisphere 29.8
2503 Female, age 72, unknown 28.8
1821 Female, age 72, unknown 28.3
1954 Female, age 42, unknown 26.1
1865 Male, age 51, unknown 25.5
2725 Female, age 75, unknown 25.2
1904 Male, age 53, unknown 24.7
2227 Male, age 72, unknown 23.8
2785 Male, age 18, unknown 23.8
2588 Male, age 74, left hemisphere 23.1
2769 Male, age 72, unknown 23.1
2823 Male, age 76, right hemisphere 22.3
Substantia nigra
nTPM: 34.5
1916 Female, age 42, unknown 41.6
2241 Male, age 72, unknown 40.0
2699 Male, age 18, unknown 36.1
2665 Male, age 74, both hemispheres 36.0
1851 Male, age 51, unknown 35.7
2583 Male, age 75, right hemisphere 34.6
2590 Female, age 75, unknown 33.0
2409 Female, age 72, unknown 30.7
1941 Male, age 53, unknown 29.5
1889 Female, age 72, unknown 27.9
Superior colliculus
nTPM: 27.0
2664 Male, age 75, both hemispheres 37.8
2587 Male, age 74, left hemisphere 28.3
1995 Male, age 72, unknown 28.1
1796 Male, age 53, unknown 26.2
1839 Male, age 51, unknown 25.9
1913 Female, age 42, unknown 25.7
2668 Female, age 75, unknown 25.6
2261 Male, age 18, unknown 25.0
2087 Female, age 72, unknown 24.5
1895 Male, age 76, right hemisphere 22.5
Ventral tegmental area
nTPM: 30.3
1915 Female, age 42, unknown 35.4
1942 Male, age 51, unknown 32.0
2021 Male, age 53, unknown 31.6
2410 Female, age 72, unknown 31.2
2223 Female, age 72, unknown 27.4
2218 Male, age 76, both hemispheres 23.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 30.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 30.4
Samples: 139

Max nTPM: 86.2
Min nTPM: 11.2
Std nTPM: 11.8
Median nTPM: 26.7
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 86.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 69.9
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 63.8
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 61.3
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 56.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 56.4
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 56.1
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 56.1
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 55.3
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 54.6
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 54.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 18.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 18.3
FF:10158-103A5 76 years, female 18.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 21.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 19.6
Samples: 4

Max nTPM: 23.2
Min nTPM: 16.8
Sample A Female 23.2
Sample B Female 20.6
Sample C Male 17.6
Sample D Male 16.8
Midbrain
nTPM: 19.6
Samples: 4

Max nTPM: 30.0
Min nTPM: 15.3
Sample A Female 30.0
Sample B Female 17.1
Sample C Male 15.3
Sample D Male 16.1
Periaqueductal gray
nTPM: 20.0
Samples: 3

Max nTPM: 21.3
Min nTPM: 18.5
Sample B Female 20.1
Sample C Male 21.3
Sample D Male 18.5
Superior colliculi
nTPM: 21.1
Samples: 4

Max nTPM: 30.5
Min nTPM: 15.2
Sample A Female 22.3
Sample B Female 30.5
Sample C Male 16.4
Sample D Male 15.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 80.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 80.8
Samples: 4

Max nTPM: 86.2
Min nTPM: 77.2
Sample A Male 86.2
Sample B Male 82.2
Sample C Female 77.2
Sample D Female 77.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 5.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.8
74583117 Antisense, RP_051214_02_F01, Mouse strain C57BL/6J (56 days, male) 6.3
68797491 Antisense, RP_050125_02_D05, Mouse strain C57BL/6J (56 days, male) 5.4

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