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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Not detected
Neuronal cells:
Not detected
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
41.6
nTPM
HPA Brain:
187.6
nTPM
GTEx:
41.6
nTPM
FANTOM5:
231.8
Scaled Tags Per Million
Pig:
44.1
nTPM
Mouse:
26.1
nTPM
Allen mouse:
0.0
Expression energy
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA049331
Antibody HPA056959
Glial cells
Not detected
Not detected
Neuronal cells
Low
Not detected
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
187.6
Sample id
Sample description
nTPM
Hippocampus nTPM: 140.2
1911
Female, age 85, right hemisphere
168.9
2529
Female, age 94, left hemisphere
148.7
1855
Male, age 76, left hemisphere
148.4
2621
Female, age 67, right hemisphere
136.9
1898
Male, age 80, left hemisphere
119.5
2148
Female, age 91, left hemisphere
118.8
Dentate gyrus nTPM: 136.1
2530
Female, age 94, left hemisphere
205.6
2528
Male, age 74, both hemispheres
156.4
2010
Male, age 76, both hemispheres
155.7
2246
Female, age 85, both hemispheres
131.3
2531
Female, age 67, both hemispheres
89.6
1927
Female, age 91, both hemispheres
78.3
Entorhinal gyrus nTPM: 137.3
2117
Female, age 91, right hemisphere
189.3
2764
Male, age 80, right hemisphere
168.5
1787
Male, age 76, left hemisphere
136.3
1938
Female, age 85, left hemisphere
124.3
2686
Male, age 75, right hemisphere
103.8
2613
Female, age 94, left hemisphere
101.5
Hippocampus, CA1 nTPM: 117.4
2527
Male, age 74, both hemispheres
155.2
2082
Female, age 91, right hemisphere
144.2
1873
Female, age 85, both hemispheres
115.2
2045
Male, age 76, both hemispheres
92.7
2749
Male, age 80, left hemisphere
79.7
Hippocampus, CA2 nTPM: 131.0
2249
Male, age 74, both hemispheres
193.2
2113
Female, age 91, right hemisphere
140.9
1940
Female, age 85, left hemisphere
135.6
1963
Male, age 80, left hemisphere
121.6
2437
Female, age 94, left hemisphere
118.2
1892
Male, age 76, both hemispheres
76.7
Hippocampus, CA3 nTPM: 101.3
1891
Female, age 85, both hemispheres
182.8
2436
Male, age 74, both hemispheres
110.4
2620
Female, age 94, left hemisphere
93.1
1867
Male, age 76, both hemispheres
89.2
2861
Female, age 67, both hemispheres
75.2
2137
Male, age 80, left hemisphere
57.5
Parahippocampal cortex nTPM: 125.8
2692
Male, age 74, both hemispheres
178.0
2532
Female, age 72, left hemisphere
157.9
1990
Female, age 91, right hemisphere
154.3
2018
Male, age 76, both hemispheres
151.4
2245
Female, age 91, both hemispheres
124.2
1933
Female, age 85, both hemispheres
110.9
1850
Male, age 80, both hemispheres
104.6
2622
Female, age 67, right hemisphere
96.9
2250
Female, age 67, right hemisphere
94.0
2693
Female, age 94, both hemispheres
85.8
Perirhinal gyrus nTPM: 81.7
2848
Male, age 76, right hemisphere
102.1
2521
Female, age 94, right hemisphere
86.5
1794
Male, age 80, right hemisphere
76.5
1847
Female, age 91, left hemisphere
74.7
1841
Female, age 85, right hemisphere
68.7
Subiculum nTPM: 187.6
2042
Male, age 76, both hemispheres
285.4
1901
Male, age 80, both hemispheres
215.3
1977
Female, age 85, both hemispheres
178.4
2619
Male, age 74, both hemispheres
173.4
2438
Female, age 94, left hemisphere
141.8
2729
Female, age 91, right hemisphere
131.1
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
41.6
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 41.6
Samples: 197
Max nTPM: 202.2
Min nTPM: 4.8
Std nTPM: 27.4
Median nTPM: 35.3
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
202.2
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
133.6
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
131.3
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
129.6
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
121.9
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
117.5
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
116.9
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
102.4
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
93.5
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
91.6
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
91.5
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
89.2
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
88.3
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
85.1
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
79.9
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
78.9
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
78.5
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
77.6
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
77.4
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
73.0
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
72.9
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
72.0
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
69.7
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
66.2
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
65.0
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
64.6
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
63.6
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
63.6
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
63.5
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
62.9
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
62.8
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
62.4
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
62.0
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
61.5
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
61.3
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
60.8
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
60.8
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
60.4
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
58.0
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
57.7
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
57.6
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
57.5
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
57.4
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
57.4
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
57.3
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
56.0
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
55.9
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
55.8
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
55.5
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
55.3
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
53.6
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
52.4
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
52.0
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
51.3
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
50.7
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
50.2
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
49.7
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
48.6
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
48.5
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
48.0
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
47.5
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
47.3
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
46.7
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
46.6
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
46.3
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
46.2
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
45.5
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
45.4
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
44.7
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
44.6
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
43.9
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
43.7
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
43.6
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
43.4
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
43.3
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
42.7
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
42.6
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
42.5
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
42.4
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
42.3
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
41.9
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
41.5
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
41.4
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
41.3
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
40.1
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
39.5
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
39.3
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
38.6
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
38.4
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
38.3
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
37.7
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
37.6
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
37.3
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
37.0
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
36.8
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
36.7
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
35.7
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
35.6
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
35.3
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
34.9
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
34.7
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
34.3
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
34.2
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
34.1
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
33.7
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
33.3
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
32.8
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
32.4
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
31.1
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
30.8
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
30.3
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
29.7
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
29.0
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
28.8
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
28.7
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
28.5
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
28.0
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
27.8
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
27.6
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
27.5
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
27.5
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
27.4
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
27.3
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
27.2
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
26.8
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
26.7
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
26.6
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
25.8
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
25.7
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
25.5
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
25.5
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
25.0
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
24.9
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
24.6
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
24.6
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
24.4
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
24.0
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
24.0
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
23.8
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
23.6
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
23.5
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
23.5
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
23.4
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
23.4
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
23.4
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
22.8
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
22.6
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
22.1
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
22.1
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
22.0
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
21.8
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
21.8
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
21.7
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
21.0
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
21.0
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
21.0
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
20.7
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
20.3
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
20.1
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
19.9
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
19.9
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
19.8
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
19.1
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
19.1
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
19.0
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
18.9
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
18.8
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
18.6
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
18.5
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
18.4
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
18.2
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
18.1
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
18.0
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
17.8
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
17.3
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
17.1
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
17.0
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
16.9
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
16.4
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
16.2
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
15.9
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
15.8
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
15.7
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
15.0
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
14.9
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
14.6
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
14.3
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
14.0
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
13.8
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
13.0
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
12.7
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
10.8
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
10.6
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
9.8
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
7.8
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
6.6
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
4.8
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
26.1
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 16.3
Samples: 4
Max nTPM: 23.1
Min nTPM: 11.5
Sample A
Male
23.1
Sample B
Male
16.2
Sample C
Female
14.4
Sample D
Female
11.5
Hippocampal formation nTPM: 26.1
Samples: 4
Max nTPM: 33.7
Min nTPM: 21.5
Sample A
Male
21.5
Sample B
Male
24.1
Sample C
Female
33.7
Sample D
Female
25.0
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.