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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
13.2
nTPM
HPA Brain:
15.7
nTPM
GTEx:
13.2
nTPM
FANTOM5:
8.7
Scaled Tags Per Million
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
15.7
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 14.9
2586
Male, age 75, left hemisphere
22.7
2019
Male, age 18, unknown
19.1
2828
Female, age 72, unknown
17.4
2219
Male, age 76, both hemispheres
16.3
1827
Male, age 72, unknown
14.3
1870
Female, age 42, unknown
13.0
2666
Male, age 74, left hemisphere
12.8
1833
Male, age 53, unknown
12.2
1830
Male, age 51, unknown
11.7
2411
Female, age 72, unknown
9.9
Dorsal raphe nucleus nTPM: 12.9
1828
Male, age 53, unknown
14.3
2750
Male, age 76, both hemispheres
13.5
2047
Male, age 72, unknown
13.2
2016
Female, age 72, unknown
12.3
2298
Female, age 72, unknown
11.2
Inferior colliculus nTPM: 14.6
1890
Male, age 53, unknown
15.3
1848
Female, age 42, unknown
14.6
2849
Male, age 72, unknown
14.3
2097
Female, age 72, unknown
14.0
Median raphe nucleus nTPM: 13.0
2220
Male, age 76, midline
13.0
Periaquaductal grey, anterior nTPM: 14.5
2502
Female, age 75, unknown
16.5
1795
Male, age 51, unknown
15.8
1947
Male, age 18, unknown
11.3
Periaquaductal grey, dorsal nTPM: 12.4
2850
Male, age 76, both hemispheres
13.0
1831
Male, age 72, unknown
12.9
1840
Male, age 53, unknown
12.3
2464
Female, age 72, unknown
11.5
Periaquaductal grey, lateral nTPM: 11.8
2272
Male, age 74, both hemispheres
14.2
2140
Male, age 76, both hemispheres
11.5
2053
Male, age 18, unknown
9.6
Pretectal area nTPM: 15.7
2007
Male, age 72, unknown
20.6
1817
Female, age 42, unknown
19.9
2667
Female, age 75, unknown
18.0
1815
Male, age 53, unknown
17.4
1944
Female, age 72, unknown
15.9
1816
Male, age 51, unknown
15.8
2407
Male, age 75, both hemispheres
14.7
2273
Male, age 74, both hemispheres
14.5
2224
Female, age 72, unknown
12.7
2316
Male, age 76, right hemisphere
12.0
2825
Male, age 18, unknown
11.5
Red nucleus nTPM: 14.5
2785
Male, age 18, unknown
18.3
2769
Male, age 72, unknown
15.1
2503
Female, age 72, unknown
15.0
1821
Female, age 72, unknown
14.6
2584
Male, age 75, left hemisphere
14.6
2725
Female, age 75, unknown
14.6
2227
Male, age 72, unknown
14.3
1865
Male, age 51, unknown
14.2
1904
Male, age 53, unknown
13.7
2823
Male, age 76, right hemisphere
13.7
1954
Female, age 42, unknown
13.5
2588
Male, age 74, left hemisphere
13.0
Substantia nigra nTPM: 13.5
2699
Male, age 18, unknown
16.9
1916
Female, age 42, unknown
16.7
1851
Male, age 51, unknown
16.4
2665
Male, age 74, both hemispheres
15.1
1889
Female, age 72, unknown
15.0
1941
Male, age 53, unknown
13.4
2409
Female, age 72, unknown
11.7
2583
Male, age 75, right hemisphere
11.5
2241
Male, age 72, unknown
9.2
2590
Female, age 75, unknown
8.9
Superior colliculus nTPM: 14.7
2664
Male, age 75, both hemispheres
21.8
2668
Female, age 75, unknown
15.8
1796
Male, age 53, unknown
14.9
1995
Male, age 72, unknown
14.6
2087
Female, age 72, unknown
14.4
1839
Male, age 51, unknown
14.1
2261
Male, age 18, unknown
13.9
1913
Female, age 42, unknown
13.8
1895
Male, age 76, right hemisphere
12.2
2587
Male, age 74, left hemisphere
11.6
Ventral tegmental area nTPM: 13.1
2218
Male, age 76, both hemispheres
14.4
2223
Female, age 72, unknown
14.2
1915
Female, age 42, unknown
13.9
2021
Male, age 53, unknown
12.3
1942
Male, age 51, unknown
12.2
2410
Female, age 72, unknown
11.8
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
13.2
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 13.2
Samples: 139
Max nTPM: 26.8
Min nTPM: 4.3
Std nTPM: 4.1
Median nTPM: 13.0
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
26.8
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
24.4
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
24.0
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
22.1
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
21.7
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
20.4
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
20.3
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
19.9
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
19.3
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
19.2
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
19.2
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
19.2
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
18.8
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
18.7
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
18.7
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
18.3
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
18.2
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
18.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
18.1
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
17.9
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
17.6
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
17.4
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
17.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
16.6
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
16.5
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
16.5
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
16.4
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
16.3
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
16.1
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
16.0
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
15.9
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
15.8
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
15.7
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
15.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
15.7
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
15.6
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
15.5
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
15.4
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
15.4
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
15.3
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
15.2
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
15.0
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
14.9
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
14.8
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
14.8
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
14.7
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
14.7
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
14.7
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
14.7
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
14.7
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
14.6
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
14.6
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
14.6
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
14.2
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
14.1
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
14.1
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
14.1
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
13.9
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
13.9
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
13.8
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
13.8
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
13.7
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
13.7
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
13.7
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
13.5
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
13.5
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
13.4
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
13.2
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
13.1
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
13.0
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
13.0
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
12.9
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
12.8
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
12.8
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
12.7
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
12.5
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
12.4
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
12.3
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
12.0
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
11.9
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
11.9
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
11.8
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
11.8
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
11.7
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
11.7
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
11.7
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
11.7
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
11.7
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
11.6
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
11.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
11.6
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
11.5
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
11.4
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
11.2
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
11.2
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
11.2
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
11.2
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
10.9
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
10.8
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
10.7
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
10.7
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
10.5
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
10.4
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
10.4
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
10.3
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
10.2
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
10.2
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
10.0
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
10.0
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
10.0
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
9.9
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
9.8
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
9.7
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
9.6
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
9.5
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
9.5
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
9.4
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
9.3
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
9.2
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
8.9
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
8.7
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
8.7
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
8.7
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
8.5
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
8.3
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
8.3
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
8.2
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
8.2
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
7.9
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
7.2
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
6.9
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
6.9
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
6.4
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
6.2
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
5.8
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
4.8
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
4.8
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
4.7
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
4.3
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.