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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Not detected
Neuronal cells:
Not detected
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
24.6
nTPM
HPA Brain:
20.9
nTPM
GTEx:
24.6
nTPM
FANTOM5:
9.5
Scaled Tags Per Million
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA003895
Antibody HPA048015
Glial cells
Medium
Not detected
Neuronal cells
Medium
Not detected
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
20.9
Sample id
Sample description
nTPM
Hippocampus nTPM: 20.9
2621
Female, age 67, right hemisphere
23.6
2529
Female, age 94, left hemisphere
22.4
2148
Female, age 91, left hemisphere
21.5
1898
Male, age 80, left hemisphere
20.7
1911
Female, age 85, right hemisphere
20.5
1855
Male, age 76, left hemisphere
16.8
Dentate gyrus nTPM: 19.8
2530
Female, age 94, left hemisphere
30.2
1927
Female, age 91, both hemispheres
19.2
2531
Female, age 67, both hemispheres
18.3
2010
Male, age 76, both hemispheres
17.7
2528
Male, age 74, both hemispheres
17.1
2246
Female, age 85, both hemispheres
16.5
Entorhinal gyrus nTPM: 15.6
2117
Female, age 91, right hemisphere
17.6
2613
Female, age 94, left hemisphere
17.2
1938
Female, age 85, left hemisphere
15.4
1787
Male, age 76, left hemisphere
14.7
2764
Male, age 80, right hemisphere
14.7
2686
Male, age 75, right hemisphere
13.9
Hippocampus, CA1 nTPM: 20.4
2749
Male, age 80, left hemisphere
32.1
2527
Male, age 74, both hemispheres
22.7
1873
Female, age 85, both hemispheres
19.5
2082
Female, age 91, right hemisphere
14.3
2045
Male, age 76, both hemispheres
13.4
Hippocampus, CA2 nTPM: 19.7
1963
Male, age 80, left hemisphere
27.1
1892
Male, age 76, both hemispheres
21.9
2437
Female, age 94, left hemisphere
20.9
2249
Male, age 74, both hemispheres
16.9
2113
Female, age 91, right hemisphere
16.1
1940
Female, age 85, left hemisphere
15.3
Hippocampus, CA3 nTPM: 19.0
2137
Male, age 80, left hemisphere
26.3
2861
Female, age 67, both hemispheres
24.7
2620
Female, age 94, left hemisphere
16.9
2436
Male, age 74, both hemispheres
16.7
1867
Male, age 76, both hemispheres
16.0
1891
Female, age 85, both hemispheres
13.5
Parahippocampal cortex nTPM: 16.1
2245
Female, age 91, both hemispheres
24.0
2622
Female, age 67, right hemisphere
20.1
2692
Male, age 74, both hemispheres
17.7
1933
Female, age 85, both hemispheres
16.0
2250
Female, age 67, right hemisphere
15.1
2532
Female, age 72, left hemisphere
14.9
2018
Male, age 76, both hemispheres
14.3
1990
Female, age 91, right hemisphere
14.2
1850
Male, age 80, both hemispheres
12.9
2693
Female, age 94, both hemispheres
12.4
Perirhinal gyrus nTPM: 14.8
1794
Male, age 80, right hemisphere
16.2
2521
Female, age 94, right hemisphere
16.2
1847
Female, age 91, left hemisphere
14.9
1841
Female, age 85, right hemisphere
14.8
2848
Male, age 76, right hemisphere
11.7
Subiculum nTPM: 17.0
2438
Female, age 94, left hemisphere
21.4
2619
Male, age 74, both hemispheres
20.2
1901
Male, age 80, both hemispheres
17.1
2729
Female, age 91, right hemisphere
14.7
2042
Male, age 76, both hemispheres
14.6
1977
Female, age 85, both hemispheres
14.3
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
24.6
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 24.6
Samples: 197
Max nTPM: 70.3
Min nTPM: 3.8
Std nTPM: 10.2
Median nTPM: 23.2
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
70.3
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
57.9
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
56.1
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
54.0
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
50.5
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
50.0
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
46.0
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
44.2
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
43.9
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
41.7
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
41.7
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
41.6
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
41.1
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
41.1
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
40.2
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
39.9
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
39.0
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
38.9
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
38.8
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
37.6
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
36.7
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
36.4
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
36.2
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
35.3
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
34.8
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
34.0
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
33.8
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
33.4
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
33.4
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
33.2
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
33.2
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
33.1
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
32.8
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
32.7
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
32.7
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
32.6
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
32.6
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
32.5
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
32.4
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
32.2
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
31.9
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
31.7
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
31.6
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
31.5
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
31.4
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
31.2
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
31.2
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
31.1
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
30.7
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
30.6
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
30.5
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
30.5
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
30.4
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
29.9
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
29.9
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
29.7
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
29.7
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
29.7
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
29.2
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
28.8
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
28.6
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
28.6
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
28.5
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
28.3
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
28.0
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
27.6
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
27.4
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
27.3
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
27.2
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
27.2
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
27.1
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
26.8
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
26.6
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
26.6
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
26.3
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
26.2
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
26.1
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
26.1
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
26.0
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
25.6
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
25.4
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
25.3
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
25.0
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
25.0
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
24.7
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
24.7
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
24.7
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
24.6
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
24.6
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
24.4
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
24.2
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
24.1
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
24.0
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
24.0
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
23.8
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
23.6
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
23.5
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
23.3
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
23.2
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
23.1
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
22.9
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
22.8
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
22.7
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
22.7
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
22.6
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
22.3
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
22.3
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
22.2
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
21.8
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
21.8
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
21.7
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
21.6
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
21.6
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
21.4
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
21.4
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
21.3
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
21.2
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
21.1
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
21.0
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
20.9
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
20.9
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
20.7
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
20.5
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
20.4
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
20.2
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
20.1
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
20.1
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
20.0
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
19.8
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
19.8
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
19.8
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
19.7
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
19.6
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
19.6
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
19.5
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
19.4
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
19.4
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
19.1
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
19.1
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
18.8
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
18.7
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
18.7
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
18.5
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
18.3
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
18.3
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
18.2
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
18.2
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
17.9
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
17.7
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
17.2
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
17.0
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
16.9
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
16.9
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
16.4
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
16.3
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
16.3
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
16.1
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
16.0
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
15.8
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
15.8
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
15.6
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
15.4
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
15.3
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
15.3
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
15.2
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
15.2
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
15.1
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
15.0
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
14.8
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
14.8
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
14.7
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
14.4
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
14.2
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
14.0
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
13.8
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
13.3
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
13.2
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
13.2
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
12.9
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
12.8
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
12.6
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
12.5
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
11.3
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
11.0
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
10.8
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
10.7
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
10.4
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
10.4
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
9.3
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
8.7
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
8.4
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
8.3
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
8.3
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
7.8
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
7.2
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
6.0
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
3.8
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.