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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
9.9
nTPM
HPA Brain:
20.9
nTPM
GTEx:
9.9
nTPM
FANTOM5:
23.4
Scaled Tags Per Million
Pig:
25.9
nTPM
Mouse:
12.7
nTPM
Allen mouse:
0.2
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
20.9
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 19.5
2666
Male, age 74, left hemisphere
29.7
2586
Male, age 75, left hemisphere
21.9
2828
Female, age 72, unknown
20.9
1827
Male, age 72, unknown
19.7
1870
Female, age 42, unknown
19.0
1830
Male, age 51, unknown
18.2
2411
Female, age 72, unknown
17.2
2019
Male, age 18, unknown
16.9
1833
Male, age 53, unknown
16.6
2219
Male, age 76, both hemispheres
14.7
Dorsal raphe nucleus nTPM: 18.2
1828
Male, age 53, unknown
22.2
2047
Male, age 72, unknown
18.8
2750
Male, age 76, both hemispheres
17.8
2016
Female, age 72, unknown
16.7
2298
Female, age 72, unknown
15.7
Inferior colliculus nTPM: 18.6
2097
Female, age 72, unknown
20.6
1890
Male, age 53, unknown
19.3
1848
Female, age 42, unknown
17.7
2849
Male, age 72, unknown
16.7
Median raphe nucleus nTPM: 16.4
2220
Male, age 76, midline
16.4
Periaquaductal grey, anterior nTPM: 19.6
1947
Male, age 18, unknown
23.0
1795
Male, age 51, unknown
18.1
2502
Female, age 75, unknown
17.8
Periaquaductal grey, dorsal nTPM: 17.2
2850
Male, age 76, both hemispheres
19.2
1831
Male, age 72, unknown
18.2
1840
Male, age 53, unknown
16.1
2464
Female, age 72, unknown
15.3
Periaquaductal grey, lateral nTPM: 19.3
2140
Male, age 76, both hemispheres
22.9
2053
Male, age 18, unknown
18.1
2272
Male, age 74, both hemispheres
16.8
Pretectal area nTPM: 18.2
1944
Female, age 72, unknown
22.8
1817
Female, age 42, unknown
22.5
2007
Male, age 72, unknown
21.7
1816
Male, age 51, unknown
21.0
1815
Male, age 53, unknown
19.8
2667
Female, age 75, unknown
17.2
2825
Male, age 18, unknown
16.2
2224
Female, age 72, unknown
15.5
2273
Male, age 74, both hemispheres
15.3
2316
Male, age 76, right hemisphere
14.4
2407
Male, age 75, both hemispheres
14.3
Red nucleus nTPM: 20.9
1954
Female, age 42, unknown
24.0
2588
Male, age 74, left hemisphere
23.8
1821
Female, age 72, unknown
22.9
2769
Male, age 72, unknown
22.3
1865
Male, age 51, unknown
21.4
2503
Female, age 72, unknown
21.2
2584
Male, age 75, left hemisphere
21.2
1904
Male, age 53, unknown
20.3
2227
Male, age 72, unknown
19.8
2725
Female, age 75, unknown
19.3
2823
Male, age 76, right hemisphere
17.9
2785
Male, age 18, unknown
16.9
Substantia nigra nTPM: 19.9
2665
Male, age 74, both hemispheres
28.4
1916
Female, age 42, unknown
23.1
1851
Male, age 51, unknown
21.3
1941
Male, age 53, unknown
21.1
2590
Female, age 75, unknown
20.8
1889
Female, age 72, unknown
19.8
2699
Male, age 18, unknown
19.6
2583
Male, age 75, right hemisphere
17.8
2241
Male, age 72, unknown
16.2
2409
Female, age 72, unknown
10.4
Superior colliculus nTPM: 18.1
2261
Male, age 18, unknown
24.4
2668
Female, age 75, unknown
20.5
2087
Female, age 72, unknown
19.9
2587
Male, age 74, left hemisphere
17.5
1913
Female, age 42, unknown
17.4
1995
Male, age 72, unknown
17.0
1796
Male, age 53, unknown
16.7
1895
Male, age 76, right hemisphere
16.7
2664
Male, age 75, both hemispheres
16.5
1839
Male, age 51, unknown
14.3
Ventral tegmental area nTPM: 17.6
2218
Male, age 76, both hemispheres
19.5
1942
Male, age 51, unknown
18.8
2223
Female, age 72, unknown
18.5
1915
Female, age 42, unknown
17.4
2410
Female, age 72, unknown
16.3
2021
Male, age 53, unknown
15.4
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
9.9
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 9.9
Samples: 139
Max nTPM: 25.0
Min nTPM: 4.4
Std nTPM: 3.1
Median nTPM: 9.4
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
25.0
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
19.6
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
18.5
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
18.0
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
17.6
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
17.1
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
15.8
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
15.3
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
15.2
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
14.5
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
14.5
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
14.3
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
14.3
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
13.9
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
13.7
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
13.6
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
13.6
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
13.1
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
13.0
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
12.9
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
12.9
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
12.9
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
12.8
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
12.6
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
12.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
12.5
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
12.3
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
11.8
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
11.8
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
11.8
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
11.7
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
11.7
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
11.5
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
11.5
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
11.5
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
11.3
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
11.3
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
11.3
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
11.2
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
11.0
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
10.9
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
10.8
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
10.7
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
10.7
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
10.6
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
10.6
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
10.6
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
10.6
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
10.5
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
10.5
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
10.4
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
10.4
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
10.4
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
10.3
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
10.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
10.2
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
10.1
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
10.0
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
10.0
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
9.9
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
9.8
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
9.8
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
9.7
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
9.6
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
9.6
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
9.6
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
9.6
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
9.5
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
9.4
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
9.4
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
9.4
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
9.4
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
9.2
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
9.2
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
9.1
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
9.1
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
9.1
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
9.1
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
9.0
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
9.0
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
9.0
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
8.9
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
8.9
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
8.9
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
8.8
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
8.8
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
8.6
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
8.5
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
8.5
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
8.4
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
8.4
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
8.4
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
8.2
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
8.2
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
8.2
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
8.2
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
8.1
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
8.0
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
7.9
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
7.9
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
7.9
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
7.9
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
7.9
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
7.7
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
7.7
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
7.7
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
7.6
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
7.6
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
7.6
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
7.5
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
7.5
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
7.4
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
7.4
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
7.3
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
7.3
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
7.1
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
7.1
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
7.0
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
6.8
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
6.8
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
6.7
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
6.6
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
6.5
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
6.5
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
6.5
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
6.3
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
6.3
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
6.3
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
6.3
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
6.3
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
6.3
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
6.3
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
6.2
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
6.0
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
5.6
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
5.5
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
5.4
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
4.9
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
4.4
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
12.7
Mouse sample
Sample description
nTPM
Midbrain nTPM: 12.7
Samples: 4
Max nTPM: 13.8
Min nTPM: 11.8
Sample A
Male
12.2
Sample B
Male
13.1
Sample C
Female
13.8
Sample D
Female
11.8
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.