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  • EEF1B2
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:487.6 nTPM
HPA Brain:76.7 nTPM
GTEx:487.6 nTPM
FANTOM5:104.9 Scaled Tags Per Million
Pig:189.6 nTPM
Mouse:156.6 nTPM
Allen mouse:9.7 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

76.7
Sample id Sample description nTPM
Amygdala
nTPM: 72.9
2695 Female, age 67, right hemisphere 89.2
2514 Male, age 75, right hemisphere 75.1
2517 Female, age 94, left hemisphere 69.0
1987 Female, age 91, left hemisphere 67.1
2814 Male, age 76, right hemisphere 63.9
Basal amygdala
nTPM: 61.0
2827 Female, age 67, right hemisphere 99.8
2609 Male, age 75, right hemisphere 58.9
2110 Male, age 80, left hemisphere 58.7
2685 Female, age 94, left hemisphere 56.1
2243 Female, age 91, right hemisphere 46.6
1955 Male, age 76, both hemispheres 45.7
Central amygdala
nTPM: 67.6
2826 Female, age 94, left hemisphere 112.1
2515 Male, age 75, right hemisphere 67.9
1905 Male, age 76, both hemispheres 56.7
2239 Male, age 80, left hemisphere 51.7
2701 Female, age 91, right hemisphere 49.6
Corticomedial amygdala
nTPM: 55.7
2535 Female, age 67, right hemisphere 63.7
2428 Male, age 75, right hemisphere 58.3
2829 Male, age 80, left hemisphere 56.0
2429 Female, age 94, left hemisphere 53.6
2240 Male, age 76, both hemispheres 51.6
2242 Female, age 91, right hemisphere 51.2
Lateral amygdala
nTPM: 76.7
2830 Female, age 67, right hemisphere 135.2
2516 Male, age 75, right hemisphere 91.1
2534 Female, age 94, left hemisphere 79.1
2256 Male, age 80, left hemisphere 55.9
1883 Male, age 76, both hemispheres 55.1
2255 Female, age 91, right hemisphere 44.0

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

487.6
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 487.6
Samples: 181

Max nTPM: 1276.2
Min nTPM: 241.8
Std nTPM: 165.3
Median nTPM: 444.4
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 1276.2
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 1152.5
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 1107.4
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 1062.3
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 1025.1
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 933.7
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 864.5
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 848.9
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 838.8
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 800.1
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 758.8
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 749.5
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 739.5
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 685.9
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 684.7
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 674.2
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 673.8
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 661.2
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 655.9
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 651.3
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 648.6
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 646.3
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 643.8
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 640.4
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 638.0
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 634.3
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 623.9
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 621.9
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 617.4
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 611.6
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 595.0
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 585.3
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 585.1
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 574.4
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 567.6
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 566.6
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 564.4
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 562.5
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 560.8
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 560.6
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 559.5
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 558.2
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 558.2
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 553.4
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 552.1
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 549.8
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 548.1
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 544.4
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 544.4
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 541.6
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 540.6
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 537.5
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 537.4
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 532.1
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 530.4
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 526.1
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 525.7
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 523.2
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 521.6
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 518.4
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 516.9
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 510.7
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 507.7
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 504.6
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 497.3
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 496.4
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 493.8
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 491.2
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 490.7
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 488.8
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 486.2
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 486.1
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 484.6
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 483.7
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 481.4
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 480.5
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 480.4
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 479.4
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 475.7
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 474.7
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 474.2
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 472.1
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 472.1
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 470.5
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 470.4
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 469.9
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 466.2
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 456.3
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 456.3
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 446.4
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 444.4
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 443.9
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 441.2
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 440.3
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 438.9
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 438.6
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 438.1
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 437.2
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 436.6
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 436.0
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 434.8
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 434.4
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 433.3
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 431.6
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 431.0
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 429.5
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 428.3
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 427.2
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 425.4
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 425.2
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 425.2
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 425.2
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 425.0
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 419.2
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 417.5
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 416.8
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 416.8
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 416.7
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 415.4
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 414.7
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 410.7
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 410.2
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 408.3
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 406.6
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 403.2
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 402.7
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 395.9
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 395.5
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 395.2
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 392.9
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 388.2
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 383.6
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 381.8
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 378.8
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 378.2
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 377.8
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 377.4
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 376.3
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 373.2
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 372.2
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 371.8
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 369.5
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 367.7
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 367.1
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 364.7
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 363.8
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 363.0
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 360.5
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 354.0
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 353.0
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 352.2
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 348.5
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 348.2
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 346.8
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 344.7
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 342.4
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 341.6
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 340.0
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 337.0
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 335.4
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 333.9
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 332.4
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 328.4
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 327.2
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 326.8
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 324.6
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 321.0
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 320.2
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 316.2
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 314.8
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 307.7
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 305.7
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 297.2
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 291.0
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 290.7
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 276.9
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 276.3
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 273.1
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 266.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 261.3
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 241.8
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

104.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 104.9
FF:10151-102I7 76 years, female 104.9

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

189.6
Pig sample Sample description nTPM
Amygdala
nTPM: 189.6
Samples: 4

Max nTPM: 245.1
Min nTPM: 134.4
Sample A Female 245.1
Sample B Female 200.5
Sample C Male 178.3
Sample D Male 134.4

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

156.6
Mouse sample Sample description nTPM
Amygdala
nTPM: 156.7
Samples: 4

Max nTPM: 169.7
Min nTPM: 146.4
Sample A Male 155.8
Sample B Male 154.7
Sample C Female 169.7
Sample D Female 146.4

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

9.7
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 9.7
75934526 Antisense, RP_060530_01_E02, Mouse strain C57BL/6J (56 days, male) 11.9
68443148 Antisense, RP_050111_01_D10, Mouse strain C57BL/6J (56 days, male) 7.6

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