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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
26.6
nTPM
HPA Brain:
54.5
nTPM
GTEx:
26.6
nTPM
FANTOM5:
57.8
Scaled Tags Per Million
Pig:
22.4
nTPM
Mouse:
31.4
nTPM
Allen mouse:
1.0
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
54.5
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 46.2
2219
Male, age 76, both hemispheres
64.1
2019
Male, age 18, unknown
53.0
2411
Female, age 72, unknown
52.0
1827
Male, age 72, unknown
43.9
1830
Male, age 51, unknown
43.5
1870
Female, age 42, unknown
42.4
2828
Female, age 72, unknown
42.0
2666
Male, age 74, left hemisphere
41.4
1833
Male, age 53, unknown
40.0
2586
Male, age 75, left hemisphere
40.0
Dorsal raphe nucleus nTPM: 46.4
2047
Male, age 72, unknown
57.3
1828
Male, age 53, unknown
52.7
2750
Male, age 76, both hemispheres
41.9
2298
Female, age 72, unknown
41.0
2016
Female, age 72, unknown
38.8
Inferior colliculus nTPM: 46.3
1890
Male, age 53, unknown
52.4
2097
Female, age 72, unknown
46.4
2849
Male, age 72, unknown
43.5
1848
Female, age 42, unknown
43.0
Median raphe nucleus nTPM: 54.5
2220
Male, age 76, midline
54.5
Periaquaductal grey, anterior nTPM: 38.2
1947
Male, age 18, unknown
42.7
1795
Male, age 51, unknown
39.5
2502
Female, age 75, unknown
32.5
Periaquaductal grey, dorsal nTPM: 37.6
2464
Female, age 72, unknown
44.5
1840
Male, age 53, unknown
39.6
1831
Male, age 72, unknown
37.7
2850
Male, age 76, both hemispheres
28.8
Periaquaductal grey, lateral nTPM: 36.1
2272
Male, age 74, both hemispheres
39.9
2053
Male, age 18, unknown
34.2
2140
Male, age 76, both hemispheres
34.2
Pretectal area nTPM: 44.4
2007
Male, age 72, unknown
50.6
1816
Male, age 51, unknown
47.4
2667
Female, age 75, unknown
47.3
2407
Male, age 75, both hemispheres
46.6
1817
Female, age 42, unknown
45.9
2224
Female, age 72, unknown
44.7
1944
Female, age 72, unknown
44.5
2316
Male, age 76, right hemisphere
40.9
1815
Male, age 53, unknown
40.8
2273
Male, age 74, both hemispheres
39.8
2825
Male, age 18, unknown
39.6
Red nucleus nTPM: 43.8
2584
Male, age 75, left hemisphere
52.9
2588
Male, age 74, left hemisphere
51.5
2785
Male, age 18, unknown
50.4
2503
Female, age 72, unknown
45.7
1821
Female, age 72, unknown
44.0
1954
Female, age 42, unknown
42.1
2725
Female, age 75, unknown
41.6
2769
Male, age 72, unknown
41.0
2227
Male, age 72, unknown
40.4
2823
Male, age 76, right hemisphere
39.2
1865
Male, age 51, unknown
38.3
1904
Male, age 53, unknown
38.1
Substantia nigra nTPM: 51.6
1941
Male, age 53, unknown
60.7
2241
Male, age 72, unknown
58.7
1916
Female, age 42, unknown
58.4
2590
Female, age 75, unknown
55.6
1851
Male, age 51, unknown
52.6
2583
Male, age 75, right hemisphere
50.6
2409
Female, age 72, unknown
49.1
1889
Female, age 72, unknown
47.7
2665
Male, age 74, both hemispheres
42.9
2699
Male, age 18, unknown
40.2
Superior colliculus nTPM: 40.7
1895
Male, age 76, right hemisphere
45.1
2087
Female, age 72, unknown
43.6
2664
Male, age 75, both hemispheres
42.7
2668
Female, age 75, unknown
42.7
1839
Male, age 51, unknown
42.5
1796
Male, age 53, unknown
40.7
2261
Male, age 18, unknown
40.1
2587
Male, age 74, left hemisphere
39.7
1913
Female, age 42, unknown
39.3
1995
Male, age 72, unknown
30.8
Ventral tegmental area nTPM: 46.5
2410
Female, age 72, unknown
52.7
2218
Male, age 76, both hemispheres
49.0
1915
Female, age 42, unknown
46.1
1942
Male, age 51, unknown
46.1
2223
Female, age 72, unknown
45.4
2021
Male, age 53, unknown
39.5
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
26.6
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 26.6
Samples: 139
Max nTPM: 53.4
Min nTPM: 6.3
Std nTPM: 8.1
Median nTPM: 27.1
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
53.4
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
50.6
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
48.5
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
42.9
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
42.6
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
42.0
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
40.4
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
39.9
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
38.1
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
37.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
36.9
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
36.5
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
36.1
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
36.1
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
35.4
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
35.1
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
34.9
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
34.9
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
34.5
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
34.5
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
34.4
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
34.3
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
33.9
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
33.8
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
33.4
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
33.3
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
33.2
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
33.1
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
32.9
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
32.6
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
32.0
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
31.9
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
31.7
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
31.7
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
31.4
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
30.9
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
30.9
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
30.8
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
30.6
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
30.5
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
30.5
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
30.2
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
29.8
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
29.3
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
29.1
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
28.8
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
28.7
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
28.7
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
28.7
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
28.7
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
28.6
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
28.6
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
28.6
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
28.4
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
28.4
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
28.4
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
28.3
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
28.3
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
28.2
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
28.1
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
27.7
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
27.7
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
27.6
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
27.5
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
27.4
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
27.3
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
27.3
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
27.2
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
27.1
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
27.1
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
27.1
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
26.8
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
26.6
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
26.5
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
26.3
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
26.1
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
25.9
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
25.8
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
25.8
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
25.6
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
25.5
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
25.4
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
25.3
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
25.0
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
24.9
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
24.9
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
24.7
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
24.7
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
23.6
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
23.6
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
23.5
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
23.1
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
23.1
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
22.9
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
22.8
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
22.8
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
22.6
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
22.4
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
22.3
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
22.2
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
22.2
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
22.1
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
22.0
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
21.8
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
21.8
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
21.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
21.6
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
21.2
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
21.1
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
20.8
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
20.7
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
20.5
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
20.5
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
20.1
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
20.0
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
20.0
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
19.7
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
19.6
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
19.6
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
19.4
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
18.6
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
18.4
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
17.8
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
17.2
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
16.9
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
16.6
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
15.0
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
14.7
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
14.5
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
13.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
13.3
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
12.9
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
12.4
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
10.5
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
10.3
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
9.0
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
8.2
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
8.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
6.3
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
31.4
Mouse sample
Sample description
nTPM
Midbrain nTPM: 31.4
Samples: 4
Max nTPM: 33.0
Min nTPM: 28.9
Sample A
Male
28.9
Sample B
Male
32.1
Sample C
Female
31.7
Sample D
Female
33.0
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.