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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
50.3
nTPM
HPA Brain:
88.3
nTPM
GTEx:
50.3
nTPM
FANTOM5:
251.0
Scaled Tags Per Million
Pig:
92.8
nTPM
Mouse:
77.5
nTPM
Allen mouse:
5.8
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
88.3
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 76.9
1830
Male, age 51, unknown
89.9
1833
Male, age 53, unknown
89.1
2411
Female, age 72, unknown
87.4
1870
Female, age 42, unknown
86.5
2666
Male, age 74, left hemisphere
79.5
2219
Male, age 76, both hemispheres
71.8
1827
Male, age 72, unknown
70.4
2019
Male, age 18, unknown
70.2
2828
Female, age 72, unknown
70.2
2586
Male, age 75, left hemisphere
54.0
Dorsal raphe nucleus nTPM: 84.9
2016
Female, age 72, unknown
89.0
1828
Male, age 53, unknown
87.3
2750
Male, age 76, both hemispheres
86.9
2047
Male, age 72, unknown
83.2
2298
Female, age 72, unknown
77.8
Inferior colliculus nTPM: 74.5
2849
Male, age 72, unknown
80.8
1848
Female, age 42, unknown
78.5
1890
Male, age 53, unknown
70.8
2097
Female, age 72, unknown
67.7
Median raphe nucleus nTPM: 88.3
2220
Male, age 76, midline
88.3
Periaquaductal grey, anterior nTPM: 70.8
1947
Male, age 18, unknown
83.7
2502
Female, age 75, unknown
69.0
1795
Male, age 51, unknown
59.5
Periaquaductal grey, dorsal nTPM: 79.3
2850
Male, age 76, both hemispheres
88.8
2464
Female, age 72, unknown
79.1
1840
Male, age 53, unknown
75.4
1831
Male, age 72, unknown
74.0
Periaquaductal grey, lateral nTPM: 73.5
2140
Male, age 76, both hemispheres
78.7
2053
Male, age 18, unknown
74.8
2272
Male, age 74, both hemispheres
66.9
Pretectal area nTPM: 73.1
2667
Female, age 75, unknown
80.7
2273
Male, age 74, both hemispheres
79.3
2224
Female, age 72, unknown
78.6
2316
Male, age 76, right hemisphere
74.4
2825
Male, age 18, unknown
74.3
1815
Male, age 53, unknown
73.8
2407
Male, age 75, both hemispheres
71.1
1817
Female, age 42, unknown
69.1
1944
Female, age 72, unknown
67.8
2007
Male, age 72, unknown
67.8
1816
Male, age 51, unknown
67.0
Red nucleus nTPM: 83.6
1821
Female, age 72, unknown
92.8
1954
Female, age 42, unknown
90.4
2503
Female, age 72, unknown
89.7
1865
Male, age 51, unknown
87.1
1904
Male, age 53, unknown
84.8
2823
Male, age 76, right hemisphere
83.0
2588
Male, age 74, left hemisphere
82.4
2227
Male, age 72, unknown
80.9
2769
Male, age 72, unknown
80.9
2725
Female, age 75, unknown
79.5
2584
Male, age 75, left hemisphere
76.8
2785
Male, age 18, unknown
75.1
Substantia nigra nTPM: 81.1
2241
Male, age 72, unknown
100.0
1916
Female, age 42, unknown
86.7
1941
Male, age 53, unknown
86.6
2699
Male, age 18, unknown
83.1
2409
Female, age 72, unknown
82.8
1851
Male, age 51, unknown
80.1
1889
Female, age 72, unknown
79.2
2590
Female, age 75, unknown
75.3
2583
Male, age 75, right hemisphere
72.8
2665
Male, age 74, both hemispheres
64.8
Superior colliculus nTPM: 71.1
2587
Male, age 74, left hemisphere
86.5
1895
Male, age 76, right hemisphere
81.4
1839
Male, age 51, unknown
73.4
2668
Female, age 75, unknown
73.0
1913
Female, age 42, unknown
71.3
1995
Male, age 72, unknown
70.4
2261
Male, age 18, unknown
66.6
1796
Male, age 53, unknown
65.6
2087
Female, age 72, unknown
63.1
2664
Male, age 75, both hemispheres
59.5
Ventral tegmental area nTPM: 80.8
2410
Female, age 72, unknown
85.4
2223
Female, age 72, unknown
85.1
1915
Female, age 42, unknown
81.6
1942
Male, age 51, unknown
81.1
2218
Male, age 76, both hemispheres
79.7
2021
Male, age 53, unknown
71.7
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
50.3
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 50.3
Samples: 139
Max nTPM: 110.3
Min nTPM: 32.4
Std nTPM: 13.4
Median nTPM: 47.3
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
110.3
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
105.7
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
102.0
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
89.4
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
84.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
80.5
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
77.9
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
77.8
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
76.4
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
74.5
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
73.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
69.0
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
68.5
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
65.8
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
65.6
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
63.8
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
63.0
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
62.7
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
62.5
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
61.5
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
61.3
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
59.0
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
58.4
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
57.5
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
56.5
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
56.4
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
56.1
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
55.4
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
55.3
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
55.1
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
54.5
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
53.8
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
53.4
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
53.4
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
53.0
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
52.9
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
52.8
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
52.6
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
52.6
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
52.3
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
52.0
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
52.0
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
51.9
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
51.4
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
51.4
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
51.3
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
50.6
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
50.3
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
50.3
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
50.0
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
49.9
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
49.9
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
49.9
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
49.8
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
49.7
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
49.5
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
49.4
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
49.2
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
49.2
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
49.1
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
49.1
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
49.0
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
48.9
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
48.9
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
48.3
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
48.3
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
48.2
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
47.7
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
47.5
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
47.3
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
47.1
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
46.6
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
46.6
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
46.5
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
46.1
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
46.0
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
45.9
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
45.8
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
45.7
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
45.7
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
45.7
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
45.4
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
45.4
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
45.4
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
44.9
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
44.9
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
44.7
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
44.6
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
44.3
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
43.9
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
43.9
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
43.7
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
43.6
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
43.6
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
43.5
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
43.4
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
43.4
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
43.2
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
43.2
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
43.2
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
43.1
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
42.7
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
42.6
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
42.6
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
42.4
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
42.3
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
42.3
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
42.3
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
41.9
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
41.8
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
41.7
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
41.7
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
41.6
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
41.3
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
41.0
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
40.9
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
40.5
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
40.1
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
39.8
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
39.5
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
39.5
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
39.4
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
39.2
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
38.2
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
37.9
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
37.8
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
37.4
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
37.0
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
36.6
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
36.5
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
36.0
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
35.9
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
35.4
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
35.3
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
35.1
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
34.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
34.0
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
32.8
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
32.4
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
77.5
Mouse sample
Sample description
nTPM
Midbrain nTPM: 77.5
Samples: 4
Max nTPM: 82.2
Min nTPM: 69.7
Sample A
Male
69.7
Sample B
Male
80.1
Sample C
Female
82.2
Sample D
Female
78.1
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.