MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:26.4 nTPM
HPA Brain:57.4 nTPM
GTEx:26.4 nTPM
FANTOM5:70.2 Scaled Tags Per Million
Pig:35.2 nTPM
Mouse:48.0 nTPM
Allen mouse:0.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 57.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 51.2
1870 Female, age 42, unknown 58.6
2411 Female, age 72, unknown 56.7
1833 Male, age 53, unknown 56.0
2019 Male, age 18, unknown 55.5
2828 Female, age 72, unknown 54.0
1830 Male, age 51, unknown 53.9
1827 Male, age 72, unknown 50.4
2219 Male, age 76, both hemispheres 44.9
2666 Male, age 74, left hemisphere 42.0
2586 Male, age 75, left hemisphere 40.2
Dorsal raphe nucleus
nTPM: 51.5
2750 Male, age 76, both hemispheres 59.8
1828 Male, age 53, unknown 50.8
2298 Female, age 72, unknown 50.2
2016 Female, age 72, unknown 48.3
2047 Male, age 72, unknown 48.3
Inferior colliculus
nTPM: 47.9
1848 Female, age 42, unknown 49.4
2097 Female, age 72, unknown 47.9
1890 Male, age 53, unknown 47.5
2849 Male, age 72, unknown 46.7
Median raphe nucleus
nTPM: 42.8
2220 Male, age 76, midline 42.8
Periaquaductal grey, anterior
nTPM: 44.9
2502 Female, age 75, unknown 45.9
1947 Male, age 18, unknown 44.9
1795 Male, age 51, unknown 44.0
Periaquaductal grey, dorsal
nTPM: 42.3
2464 Female, age 72, unknown 47.1
1840 Male, age 53, unknown 43.3
2850 Male, age 76, both hemispheres 41.8
1831 Male, age 72, unknown 37.2
Periaquaductal grey, lateral
nTPM: 44.4
2053 Male, age 18, unknown 47.7
2272 Male, age 74, both hemispheres 44.2
2140 Male, age 76, both hemispheres 41.3
Pretectal area
nTPM: 50.9
2667 Female, age 75, unknown 67.0
1815 Male, age 53, unknown 54.2
2316 Male, age 76, right hemisphere 53.0
1944 Female, age 72, unknown 51.6
1817 Female, age 42, unknown 50.6
2007 Male, age 72, unknown 50.6
2273 Male, age 74, both hemispheres 49.3
2224 Female, age 72, unknown 48.0
1816 Male, age 51, unknown 47.4
2825 Male, age 18, unknown 45.6
2407 Male, age 75, both hemispheres 42.1
Red nucleus
nTPM: 57.4
2823 Male, age 76, right hemisphere 63.7
2503 Female, age 72, unknown 61.9
1821 Female, age 72, unknown 61.4
1904 Male, age 53, unknown 60.3
1954 Female, age 42, unknown 60.3
1865 Male, age 51, unknown 59.5
2769 Male, age 72, unknown 57.5
2227 Male, age 72, unknown 56.3
2588 Male, age 74, left hemisphere 56.2
2785 Male, age 18, unknown 55.6
2725 Female, age 75, unknown 53.5
2584 Male, age 75, left hemisphere 42.5
Substantia nigra
nTPM: 47.8
1851 Male, age 51, unknown 52.3
2241 Male, age 72, unknown 52.2
1916 Female, age 42, unknown 52.0
2409 Female, age 72, unknown 51.0
1889 Female, age 72, unknown 50.2
2583 Male, age 75, right hemisphere 49.9
2699 Male, age 18, unknown 45.6
1941 Male, age 53, unknown 43.5
2665 Male, age 74, both hemispheres 41.2
2590 Female, age 75, unknown 39.7
Superior colliculus
nTPM: 49.2
1913 Female, age 42, unknown 58.9
1995 Male, age 72, unknown 55.4
1895 Male, age 76, right hemisphere 54.8
2087 Female, age 72, unknown 52.0
2261 Male, age 18, unknown 49.1
1796 Male, age 53, unknown 48.2
1839 Male, age 51, unknown 47.6
2668 Female, age 75, unknown 46.0
2587 Male, age 74, left hemisphere 45.8
2664 Male, age 75, both hemispheres 34.2
Ventral tegmental area
nTPM: 49.1
2410 Female, age 72, unknown 56.6
2223 Female, age 72, unknown 50.6
1915 Female, age 42, unknown 50.0
2218 Male, age 76, both hemispheres 49.7
1942 Male, age 51, unknown 44.9
2021 Male, age 53, unknown 43.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 26.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 26.4
Samples: 139

Max nTPM: 44.5
Min nTPM: 13.2
Std nTPM: 5.6
Median nTPM: 26.4
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 44.5
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 42.6
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 40.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 38.9
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 38.9
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 38.7
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 38.5
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 37.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 37.5
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 36.7
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 36.6
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 70.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 70.2
FF:10158-103A5 76 years, female 70.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 35.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 32.2
Samples: 4

Max nTPM: 34.9
Min nTPM: 28.4
Sample A Female 34.9
Sample B Female 31.3
Sample C Male 28.4
Sample D Male 34.3
Midbrain
nTPM: 32.4
Samples: 4

Max nTPM: 46.7
Min nTPM: 24.1
Sample A Female 46.7
Sample B Female 33.4
Sample C Male 25.5
Sample D Male 24.1
Periaqueductal gray
nTPM: 26.7
Samples: 3

Max nTPM: 30.9
Min nTPM: 24.1
Sample B Female 30.9
Sample C Male 25.2
Sample D Male 24.1
Superior colliculi
nTPM: 35.2
Samples: 4

Max nTPM: 44.1
Min nTPM: 27.3
Sample A Female 38.0
Sample B Female 44.1
Sample C Male 31.2
Sample D Male 27.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 48.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 48.0
Samples: 4

Max nTPM: 52.3
Min nTPM: 43.2
Sample A Male 52.3
Sample B Male 49.3
Sample C Female 43.2
Sample D Female 47.1

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.7
70539167 Antisense, RP_050324_02_C05, Mouse strain C57BL/6J (56 days, male) 0.7

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