MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:6.8 nTPM
HPA Brain:55.6 nTPM
GTEx:6.8 nTPM
FANTOM5:72.5 Scaled Tags Per Million
Pig:45.4 nTPM
Mouse:14.6 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 55.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 49.6
2411 Female, age 72, unknown 54.4
1833 Male, age 53, unknown 51.9
2828 Female, age 72, unknown 51.2
1827 Male, age 72, unknown 50.5
2666 Male, age 74, left hemisphere 50.0
1830 Male, age 51, unknown 48.7
2019 Male, age 18, unknown 48.6
1870 Female, age 42, unknown 47.0
2586 Male, age 75, left hemisphere 47.0
2219 Male, age 76, both hemispheres 46.7
Dorsal raphe nucleus
nTPM: 50.4
2016 Female, age 72, unknown 59.1
1828 Male, age 53, unknown 53.4
2298 Female, age 72, unknown 49.5
2750 Male, age 76, both hemispheres 46.5
2047 Male, age 72, unknown 43.7
Inferior colliculus
nTPM: 53.9
1848 Female, age 42, unknown 56.9
2849 Male, age 72, unknown 54.7
1890 Male, age 53, unknown 52.3
2097 Female, age 72, unknown 51.8
Median raphe nucleus
nTPM: 41.8
2220 Male, age 76, midline 41.8
Periaquaductal grey, anterior
nTPM: 46.0
1947 Male, age 18, unknown 48.7
2502 Female, age 75, unknown 46.4
1795 Male, age 51, unknown 42.8
Periaquaductal grey, dorsal
nTPM: 55.6
1840 Male, age 53, unknown 57.6
1831 Male, age 72, unknown 56.9
2850 Male, age 76, both hemispheres 54.8
2464 Female, age 72, unknown 53.0
Periaquaductal grey, lateral
nTPM: 47.7
2140 Male, age 76, both hemispheres 56.3
2053 Male, age 18, unknown 46.9
2272 Male, age 74, both hemispheres 40.0
Pretectal area
nTPM: 46.4
1815 Male, age 53, unknown 51.2
2316 Male, age 76, right hemisphere 51.2
2825 Male, age 18, unknown 50.7
2224 Female, age 72, unknown 50.3
1817 Female, age 42, unknown 48.7
2007 Male, age 72, unknown 45.0
1944 Female, age 72, unknown 43.9
2273 Male, age 74, both hemispheres 43.8
2407 Male, age 75, both hemispheres 42.8
2667 Female, age 75, unknown 41.8
1816 Male, age 51, unknown 40.7
Red nucleus
nTPM: 50.9
1821 Female, age 72, unknown 61.2
2503 Female, age 72, unknown 59.3
2588 Male, age 74, left hemisphere 53.2
2725 Female, age 75, unknown 52.5
2769 Male, age 72, unknown 51.4
1904 Male, age 53, unknown 50.8
1865 Male, age 51, unknown 49.5
2227 Male, age 72, unknown 49.4
1954 Female, age 42, unknown 48.6
2823 Male, age 76, right hemisphere 48.0
2785 Male, age 18, unknown 43.7
2584 Male, age 75, left hemisphere 42.9
Substantia nigra
nTPM: 48.8
2699 Male, age 18, unknown 60.1
1851 Male, age 51, unknown 55.3
1916 Female, age 42, unknown 51.6
2665 Male, age 74, both hemispheres 51.0
2241 Male, age 72, unknown 49.5
1889 Female, age 72, unknown 48.9
2590 Female, age 75, unknown 46.5
2409 Female, age 72, unknown 44.3
1941 Male, age 53, unknown 41.5
2583 Male, age 75, right hemisphere 39.8
Superior colliculus
nTPM: 48.1
2587 Male, age 74, left hemisphere 53.5
1895 Male, age 76, right hemisphere 52.7
1995 Male, age 72, unknown 52.7
1839 Male, age 51, unknown 52.5
2668 Female, age 75, unknown 52.5
1913 Female, age 42, unknown 50.4
1796 Male, age 53, unknown 46.3
2664 Male, age 75, both hemispheres 41.8
2261 Male, age 18, unknown 39.3
2087 Female, age 72, unknown 38.9
Ventral tegmental area
nTPM: 49.5
2410 Female, age 72, unknown 55.5
2218 Male, age 76, both hemispheres 49.9
1942 Male, age 51, unknown 49.8
1915 Female, age 42, unknown 49.6
2021 Male, age 53, unknown 47.6
2223 Female, age 72, unknown 44.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 6.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 6.8
Samples: 139

Max nTPM: 10.8
Min nTPM: 4.1
Std nTPM: 1.2
Median nTPM: 6.8
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 10.8
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 10.2
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 9.9
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 9.5
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 9.4
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 9.2
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 9.2
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 9.0
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 8.9
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 8.9
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 8.8
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 72.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 72.5
FF:10158-103A5 76 years, female 72.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 45.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 44.8
Samples: 4

Max nTPM: 52.7
Min nTPM: 38.7
Sample A Female 43.9
Sample B Female 43.8
Sample C Male 38.7
Sample D Male 52.7
Midbrain
nTPM: 45.4
Samples: 4

Max nTPM: 60.5
Min nTPM: 34.6
Sample A Female 60.5
Sample B Female 51.5
Sample C Male 34.6
Sample D Male 35.1
Periaqueductal gray
nTPM: 43.9
Samples: 3

Max nTPM: 46.8
Min nTPM: 39.1
Sample B Female 46.8
Sample C Male 39.1
Sample D Male 45.7
Superior colliculi
nTPM: 40.8
Samples: 4

Max nTPM: 46.3
Min nTPM: 37.8
Sample A Female 40.2
Sample B Female 38.9
Sample C Male 37.8
Sample D Male 46.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 14.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 14.6
Samples: 4

Max nTPM: 16.1
Min nTPM: 13.6
Sample A Male 14.4
Sample B Male 16.1
Sample C Female 13.6
Sample D Female 14.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
75831749 Antisense, RP_060601_02_C10, Mouse strain C57BL/6J (56 days, male) 0.1

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