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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1377.4
nTPM
Monaco:
600.9
nTPM
Schmiedel:
150.1
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1377.4
HPA sample
nTPM
gdT-cell nTPM: 820.3
Samples: 6
Max nTPM: 962.4
Min nTPM: 476.0
P10809_1007
476.0
P10809_1022
811.4
P10809_1041
962.4
P10809_1060
909.9
P10809_1077
867.7
P10809_1098
894.2
MAIT T-cell nTPM: 926.5
Samples: 6
Max nTPM: 1296.7
Min nTPM: 481.2
P10809_1006
481.2
P10809_1024
1296.7
P10809_1043
901.1
P10809_1062
930.5
P10809_1083
790.0
P10809_1097
1159.7
Memory CD4 T-cell nTPM: 1165.5
Samples: 6
Max nTPM: 1401.8
Min nTPM: 676.3
P10809_1014
676.3
P10809_1026
1172.1
P10809_1045
1401.8
P10809_1064
1188.9
P10809_1086
1249.9
P10809_1113
1304.0
Memory CD8 T-cell nTPM: 1012.2
Samples: 5
Max nTPM: 1231.7
Min nTPM: 572.2
P10809_1012
572.2
P10809_1027
1051.1
P10809_1046
1014.5
P10809_1065
1191.5
P10809_1111
1231.7
Naive CD4 T-cell nTPM: 1377.4
Samples: 6
Max nTPM: 1798.7
Min nTPM: 638.0
P10809_1015
638.0
P10809_1030
1484.9
P10809_1049
1798.7
P10809_1068
1570.2
P10809_1085
1381.7
P10809_1112
1390.8
Naive CD8 T-cell nTPM: 1077.8
Samples: 6
Max nTPM: 1261.4
Min nTPM: 605.5
P10809_1016
605.5
P10809_1031
1187.5
P10809_1050
1147.4
P10809_1069
1261.4
P10809_1087
1027.8
P10809_1110
1237.4
T-reg nTPM: 1320.5
Samples: 6
Max nTPM: 1600.5
Min nTPM: 666.7
P10809_1018
666.7
P10809_1037
1570.7
P10809_1056
1441.5
P10809_1075
1353.6
P10809_1094
1289.9
P10809_1106
1600.5
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
600.9
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 464.6
Samples: 4
Max nTPM: 695.8
Min nTPM: 292.0
RHH5202_R3573
532.0
RHH5230_R3602
292.0
RHH5259_R3631
338.6
RHH5288_R3660
695.8
Effector memory CD8 T-cell nTPM: 342.7
Samples: 4
Max nTPM: 396.5
Min nTPM: 301.7
RHH5203_R3574
346.4
RHH5231_R3603
396.5
RHH5260_R3632
326.0
RHH5289_R3661
301.7
MAIT T-cell nTPM: 421.4
Samples: 4
Max nTPM: 609.5
Min nTPM: 308.6
RHH5233_R3605
436.7
RHH5205_R3576
330.6
RHH5262_R3634
308.6
RHH5297_R3663
609.5
Memory CD4 T-cell TFH nTPM: 600.9
Samples: 4
Max nTPM: 940.8
Min nTPM: 466.9
RHH5300_R3666
479.0
RHH5236_R3608
940.8
RHH5265_R3637
466.9
RHH5208_R3579
516.8
Memory CD4 T-cell Th1 nTPM: 519.9
Samples: 4
Max nTPM: 738.2
Min nTPM: 420.3
RHH5210_R3581
471.3
RHH5302_R3668
738.2
RHH5238_R3610
449.8
RHH5267_R3639
420.3
Memory CD4 T-cell Th1/Th17 nTPM: 492.8
Samples: 4
Max nTPM: 788.1
Min nTPM: 265.2
RHH5303_R3669
788.1
RHH5211_R3582
570.1
RHH5239_R3611
265.2
RHH5268_R3640
347.7
Memory CD4 T-cell Th17 nTPM: 373.5
Samples: 4
Max nTPM: 465.4
Min nTPM: 278.0
RHH5304_R3670
404.6
RHH5212_R3583
465.4
RHH5240_R3612
345.9
RHH5269_R3641
278.0
Memory CD4 T-cell Th2 nTPM: 465.3
Samples: 4
Max nTPM: 587.3
Min nTPM: 330.9
RHH5305_R3671
486.6
RHH5213_R3584
456.2
RHH5241_R3613
587.3
RHH5270_R3642
330.9
Naive CD4 T-cell nTPM: 515.9
Samples: 4
Max nTPM: 726.4
Min nTPM: 380.7
RHH5306_R3672
512.8
RHH5214_R3585
726.4
RHH5242_R3614
443.8
RHH5271_R3643
380.7
Naive CD8 T-cell nTPM: 471.3
Samples: 4
Max nTPM: 577.5
Min nTPM: 367.0
RHH5201_R3572
466.9
RHH5229_R3601
367.0
RHH5258_R3630
577.5
RHH5287_R3659
473.6
Non-Vd2 gdTCR nTPM: 428.3
Samples: 4
Max nTPM: 545.4
Min nTPM: 310.3
RHH5235_R3607
310.3
RHH5264_R3636
523.8
RHH5207_R3578
333.6
RHH5299_R3665
545.4
T-reg nTPM: 513.9
Samples: 4
Max nTPM: 644.8
Min nTPM: 334.8
RHH5301_R3667
615.5
RHH5237_R3609
644.8
RHH5266_R3638
334.8
RHH5209_R3580
460.6
Terminal effector memory CD4 T-cell nTPM: 380.1
Samples: 2
Max nTPM: 485.9
Min nTPM: 274.3
RHH5243_R3615
274.3
RHH5272_R3644
485.9
Terminal effector memory CD8 T-cell nTPM: 493.4
Samples: 4
Max nTPM: 737.1
Min nTPM: 337.5
RHH5232_R3604
408.0
RHH5204_R3575
737.1
RHH5261_R3633
337.5
RHH5296_R3662
491.1
Vd2 gdTCR nTPM: 523.6
Samples: 4
Max nTPM: 696.6
Min nTPM: 379.2
RHH5234_R3606
385.6
RHH5206_R3577
696.6
RHH5263_R3635
379.2
RHH5298_R3664
632.9
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
The Human Protein Atlas project is funded
