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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
19.8
nTPM
HPA Brain:
47.3
nTPM
GTEx:
19.8
nTPM
FANTOM5:
15.6
Scaled Tags Per Million
Pig:
6.4
nTPM
Mouse:
0.4
nTPM
Allen mouse:
0.2
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
47.3
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 31.1
2586
Male, age 75, left hemisphere
54.8
2828
Female, age 72, unknown
37.3
1827
Male, age 72, unknown
32.1
1870
Female, age 42, unknown
29.8
2219
Male, age 76, both hemispheres
29.7
1833
Male, age 53, unknown
29.6
2411
Female, age 72, unknown
28.5
1830
Male, age 51, unknown
28.0
2666
Male, age 74, left hemisphere
22.1
2019
Male, age 18, unknown
18.8
Dorsal raphe nucleus nTPM: 37.8
2016
Female, age 72, unknown
41.3
1828
Male, age 53, unknown
40.2
2047
Male, age 72, unknown
37.8
2298
Female, age 72, unknown
37.7
2750
Male, age 76, both hemispheres
32.0
Inferior colliculus nTPM: 28.5
1890
Male, age 53, unknown
35.0
2097
Female, age 72, unknown
30.6
2849
Male, age 72, unknown
24.4
1848
Female, age 42, unknown
24.1
Median raphe nucleus nTPM: 25.0
2220
Male, age 76, midline
25.0
Periaquaductal grey, anterior nTPM: 24.9
1947
Male, age 18, unknown
31.1
1795
Male, age 51, unknown
30.3
2502
Female, age 75, unknown
13.4
Periaquaductal grey, dorsal nTPM: 28.0
1840
Male, age 53, unknown
29.5
2464
Female, age 72, unknown
28.3
2850
Male, age 76, both hemispheres
28.1
1831
Male, age 72, unknown
26.0
Periaquaductal grey, lateral nTPM: 29.4
2053
Male, age 18, unknown
32.7
2140
Male, age 76, both hemispheres
28.1
2272
Male, age 74, both hemispheres
27.4
Pretectal area nTPM: 29.4
2224
Female, age 72, unknown
44.5
1817
Female, age 42, unknown
34.2
2667
Female, age 75, unknown
34.2
2825
Male, age 18, unknown
32.8
1944
Female, age 72, unknown
30.8
2273
Male, age 74, both hemispheres
29.2
2007
Male, age 72, unknown
26.0
1815
Male, age 53, unknown
24.8
1816
Male, age 51, unknown
24.1
2316
Male, age 76, right hemisphere
22.9
2407
Male, age 75, both hemispheres
20.3
Red nucleus nTPM: 34.0
1821
Female, age 72, unknown
41.7
2503
Female, age 72, unknown
41.4
1954
Female, age 42, unknown
38.2
2725
Female, age 75, unknown
36.0
1904
Male, age 53, unknown
35.8
2227
Male, age 72, unknown
35.4
2769
Male, age 72, unknown
34.6
2823
Male, age 76, right hemisphere
34.1
1865
Male, age 51, unknown
33.4
2588
Male, age 74, left hemisphere
30.1
2584
Male, age 75, left hemisphere
29.1
2785
Male, age 18, unknown
18.5
Substantia nigra nTPM: 47.3
2699
Male, age 18, unknown
66.8
1916
Female, age 42, unknown
55.7
2590
Female, age 75, unknown
53.9
1851
Male, age 51, unknown
50.2
2241
Male, age 72, unknown
48.5
2665
Male, age 74, both hemispheres
45.6
2409
Female, age 72, unknown
44.6
2583
Male, age 75, right hemisphere
39.5
1889
Female, age 72, unknown
35.7
1941
Male, age 53, unknown
32.2
Superior colliculus nTPM: 24.6
2261
Male, age 18, unknown
28.4
2668
Female, age 75, unknown
28.1
2087
Female, age 72, unknown
28.0
1796
Male, age 53, unknown
27.6
1995
Male, age 72, unknown
27.0
1913
Female, age 42, unknown
23.9
2664
Male, age 75, both hemispheres
23.5
2587
Male, age 74, left hemisphere
21.9
1839
Male, age 51, unknown
21.6
1895
Male, age 76, right hemisphere
16.5
Ventral tegmental area nTPM: 37.3
1915
Female, age 42, unknown
47.5
2410
Female, age 72, unknown
42.6
1942
Male, age 51, unknown
37.4
2021
Male, age 53, unknown
36.4
2218
Male, age 76, both hemispheres
35.8
2223
Female, age 72, unknown
24.0
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
19.8
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 19.8
Samples: 139
Max nTPM: 55.2
Min nTPM: 4.1
Std nTPM: 10.7
Median nTPM: 17.5
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
55.2
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
54.7
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
51.3
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
50.2
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
49.8
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
47.8
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
43.8
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
43.4
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
41.6
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
37.8
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
36.5
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
35.3
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
34.9
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
34.5
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
32.9
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
31.9
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
31.1
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
30.1
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
30.0
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
28.8
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
28.4
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
28.0
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
27.6
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
27.2
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
27.2
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
27.2
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
27.1
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
26.7
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
26.6
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
26.4
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
26.0
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
25.7
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
25.4
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
25.3
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
25.0
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
24.9
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
24.5
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
24.2
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
23.9
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
23.8
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
23.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
22.9
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
22.6
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
22.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
22.4
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
22.3
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
22.0
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
21.9
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
21.7
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
21.7
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
21.4
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
21.3
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
21.3
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
21.3
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
21.2
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
21.1
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
20.8
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
20.5
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
19.8
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
19.8
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
19.7
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
19.3
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
19.2
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
19.0
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
18.9
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
18.9
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
18.2
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
18.0
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
17.9
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
17.5
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
17.1
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
16.8
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
16.8
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
16.5
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
16.5
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
16.3
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
16.3
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
16.3
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
16.1
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
16.1
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
16.1
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
16.0
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
15.8
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
15.7
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
15.4
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
15.2
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
15.1
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
14.6
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
14.4
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
14.2
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
14.2
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
14.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
14.0
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
13.9
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
13.9
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
13.6
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
13.6
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
13.1
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
13.0
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
12.9
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
12.6
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
12.4
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
12.3
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
12.2
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
12.2
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
11.7
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
11.7
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
11.3
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
11.2
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
11.0
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
10.9
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
10.8
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
10.7
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
10.3
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
10.3
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
10.2
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
9.9
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
9.7
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
9.6
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
9.2
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
8.9
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
8.9
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
8.8
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
8.7
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
8.5
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
7.9
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
7.8
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
7.8
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
7.0
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
7.0
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
7.0
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
7.0
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
6.7
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
6.6
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
6.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
5.5
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
5.1
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
5.0
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
4.1
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
0.4
Mouse sample
Sample description
nTPM
Midbrain nTPM: 0.4
Samples: 4
Max nTPM: 0.5
Min nTPM: 0.3
Sample A
Male
0.3
Sample B
Male
0.4
Sample C
Female
0.5
Sample D
Female
0.4
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.